LOCUS       NZ_LR890568             1916 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain KSB2_9A isolate KSB2_9A plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890568
VERSION     NZ_LR890568.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357401
            Assembly: GCF_904865765.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:40:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,330
            CDSs (total)                      :: 5,211
            Genes (coding)                    :: 5,079
            CDSs (with protein)               :: 5,079
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 55 of 132
            Pseudo Genes (incomplete)         :: 80 of 132
            Pseudo Genes (internal stop)      :: 21 of 132
            Pseudo Genes (multiple problems)  :: 21 of 132
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890568.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KSB2_9A"
                     /isolate="KSB2_9A"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2014-02"
     gene            488..790
                     /locus_tag="JMW10_RS26545"
     CDS             488..790
                     /locus_tag="JMW10_RS26545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     gene            complement(1049..1285)
                     /locus_tag="JMW10_RS26550"
     CDS             complement(1049..1285)
                     /locus_tag="JMW10_RS26550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(1451..1624)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          2..177
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.785"
                     /coverage="90.0"
                     /evalue="7.1e-69"
     Typing          1603..1916
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.405"
                     /coverage="81.0"
                     /evalue="1.5900000000000002e-123"
ORIGIN
        1 gccgcgttta tctcattcca cgcctgacac tcagttccgc gaaggcagtt cgctcctgga
       61 tggactgtat gcacgaaccc cccgttcagt ccgactgctg cgccttatcc ggtaactatc
      121 atcttgagtc caacccggaa agacacgact tatcgccact ggcagcagcc actggtaact
      181 gatttagagg agttagtctt gaagttatgc gcctgttaag gctaaactga aagaacagat
      241 ttggttactg cgctcctcgt aagccagtta ccacggttca aagagttgct gctctgagaa
      301 ccttcgaaaa accgccttgc agggcggttt tttcgtttac agagcaagag attacgacgc
      361 cacagaaagg atctcaagaa gatccttcac cgtaatggaa atctatccaa tccgagcaca
      421 taggatacac atcgttataa aacatcggat attatgatcc caattaaaat aagctcgagg
      481 ataaaaaatg agttcaatgg tttactgccg aggatgtggc aaggaaatac acgaaacagc
      541 aaagtcatgc ccgcactgcg gagccacaaa cgcctcttca ggttcaggtg aaaaaagtag
      601 aatcgcagcc gcgctattag cattcttcct tggtggattt ggcgcacata aattttactt
      661 aggaaaaata ggacaggggt tcctgtatct aattttttgc tggacattca tacccgcgat
      721 catcgcgttt attgagttta ttatttatct atgcgattcc gatgaaaaat tcgcacgaaa
      781 atatggctaa ctcatagcaa aaaaaagccc cctaagggct ttttttgtac ctgacggtca
      841 gaccgattaa acataacatc ccttgcccgc acccccgcag gcgccctcag cgcaatcctg
      901 ctgcatcagg gccgtttcca gcacctttcc tcaccagtat cccggaaaaa cgcccctgat
      961 gatttctgcg cgactgcatg gctatgcacg caggtgaatg gcaggtgatt tcgcagcgtc
     1021 agcaccacta aaccgccaaa agccaaaatc agcggcgcgg cgcgcgcgga cgtgaccagg
     1081 caaaatcgga ctgctgccgc tcatcctcac gtaatgcacg ctggcggtcg gcgtaacgct
     1141 gcaactcaat ttgcgcacgc gctctgttca ggacgatgtg ccggttaggc tgatttagct
     1201 ttttacctga cgctctttca gctgcggcaa cagcatcatc aagaaatttt ttctctgcag
     1261 gcgtcaagtt tgtcagtctg gccataacgt tctccagtca gaataaatca gcacagtctg
     1321 ccagacacag tagaaacgat gaagcgccag cgacggtgaa aggcagtcag aaacggtgaa
     1381 cgggagcgga ttttaatccg gtgccgtgag gcgttggaca agccgcaggc gcgtcattag
     1441 cttttagcgg gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgtata
     1501 ctggctgact atgttggcac ggatgtggaa atcagtgaag tgcttcatgt agcaggagaa
     1561 aaaaggcggc accagcgcgt cagcaggata tgtagtacag gatatattcc gcttcctcgc
     1621 tcactgactc gctgcgctcg gtcgttcggc tgcggcgagc ggtgccggct tacaggcggg
     1681 gcggaaattt cctgggagat accaggaagg agcttaacag ggaagagata aggccgcggc
     1741 gaagccgttt ttccataggc tccgcccccc tgacaaacat catgaaatct gacgctcaaa
     1801 tcagtggtgg cgaaacccga tgcggcttaa agataccagg cgtttccccc tggtggctcc
     1861 ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcattccgct gttatg
//
