LOCUS       NZ_LR890553             3825 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF142 isolate INF142 plasmid 7,
            complete sequence.
ACCESSION   NZ_LR890553
VERSION     NZ_LR890553.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357050
            Assembly: GCF_904865785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 12:05:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,698
            CDSs (total)                      :: 5,575
            Genes (coding)                    :: 5,420
            CDSs (with protein)               :: 5,420
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 51 of 155
            Pseudo Genes (incomplete)         :: 103 of 155
            Pseudo Genes (internal stop)      :: 16 of 155
            Pseudo Genes (multiple problems)  :: 15 of 155
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890553.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF142"
                     /isolate="INF142"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="7"
                     /geo_loc_name="Australia"
                     /collection_date="2013-08"
     gene            join(3508..3825,1..84)
                     /locus_tag="JMX11_RS28400"
     CDS             join(3508..3825,1..84)
                     /locus_tag="JMX11_RS28400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            889..1161
                     /locus_tag="JMX11_RS28405"
     CDS             889..1161
                     /locus_tag="JMX11_RS28405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     gene            3317..3508
                     /locus_tag="JMX11_RS28410"
     CDS             3317..3508
                     /locus_tag="JMX11_RS28410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2481..2695
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.562"
                     /coverage="100.0"
                     /evalue="1.62e-49"
     Typing          complement(1984..2500)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.847"
                     /coverage="87.0"
                     /evalue="5.5e-153"
ORIGIN
        1 caggccatgc tccttcttga aaatcaccag gcaaaattaa ctgaatcccc ggcgccatgg
       61 tggaaattct ggaaaaaatc ctgatcccgc catgcttcca ttttgctctc cggccattcc
      121 ggggagttcc tgaaccttcc caaaaatcgt cagatccctg aacgctcctc accactaaaa
      181 atacccacac actacgcaaa attaaaattt tgcagataga cctttatttt caatcagtta
      241 tctgttttaa attacgcaat tttatttttt gtaaggtgaa tccgagtcgt ggacgactct
      301 atggcgaatc gccgatgact tgcccacgat tcatatgtga atcacgccat ataatcagta
      361 cgttatgatg acttgactct agagtcgact tgccgggttg gtggcttttt gaccatggcg
      421 actctagagt caagtcacga gtcgaatcgc cggtgaattg tctggtgagt cgtccggcga
      481 cttgccataa cgtgattgcc ggccgtcgac gaacccgatt cctgatcgtg ctgaaaaccg
      541 gttttccggc tgcgccggca acgcttcacg gccacgcaat aaattgcgtc cccgttcacc
      601 gttttcggat aggaagaacg ccggaaacag gacttaccct ggctgaatgg cgtgaatttc
      661 cgcgctatgc acttgcgtgc atactcatgc atgccgtaaa aacagagcca gcgcgtttct
      721 ggcggatttt cgggtggttt gttgcctgtt ttaccggttt cccgtcagga acgccctgag
      781 gccgttttcg cggtgcgcgt aatgggacgt tatggtaaat caacggcgga tgcctgagtc
      841 tgtgttagag tcagcggatt gtgataatca gtgactcagg gagatgtttt ggctactgac
      901 gctcaggtaa aagaaattaa tgcactcatc aaaaaatacc cggactcatg ctccatctgt
      961 catgaagtct atgatgagga tgatgtgacc tacaccgttt ttgggtatga ccggaaaggt
     1021 aaaatacagg tcaccacggg atgctgtgcc ggaatgctga cagagccggt tctgctgggt
     1081 gtctgtgggt gctttgaccc ggaagaacgt gacgagatca tgcagaatca ccccatggca
     1141 aagcagtttt tcacagagtg attccgtatc tgttgagtct gaagcccgcc ttgtgcgggc
     1201 tttttcatat ctgcgtgaaa tgagacgtta tggtaaatct ctaaaggcaa tatttcccgt
     1261 cccttggagc gaactactct gtatttgatc tttggtgttg ataccccgct gcttgcagag
     1321 gggggattca ttatcgttgt tgtttgctgt aattgtctaa aatatatttg gggatagata
     1381 cgggtacaca ttcagcagat attatgtttt tcccggatat attatgataa atgtctttgt
     1441 ttgcaatgat tttatctttg aattcaatgc attcttcatt cagaatgaag gtgttaacaa
     1501 cattgtcttt cattcccaaa tttgctaatt ctgaagaaca acttgcaata ttattcgtgt
     1561 taaaacaagt tgttagtatt attgcgtata tgtatggcat taaataaacc tatttaaaaa
     1621 agtacggaat gatagtgatc ttgttcggaa atatactagt cagactttaa gtctcaggga
     1681 tatgaaccta gaacatcgtt gtattaactt gtttgagtgt tccaatcctg aatattgatg
     1741 ttatttgagt ataaaggaaa cataataaat atcacaagga tattggttaa ctatttattt
     1801 ttaaataatt tcttgagatc tgacgttgga cgtcgtagtc tcttgccatg taaacgaaaa
     1861 aaccaccttg cagggtggtt tttcgaaggt tcagtaaacc ggcaagtttc tgaaccgtgg
     1921 taacagtctt gtgcgagacg tcaccaaatc tgtcctttta gtgtagcctc agtctggcca
     1981 ccacttcaag aactcttcgt aaatctctcg cacatcctgt ttaccagtgg ccgctgccag
     2041 tggcgttaag tcgtgtcttt ccgggttgga ctcaagacga tagttaccgg aaaaggcgca
     2101 gcggtcgggc tgaacggggg gttcttgcat acagcccagc ttggagcgaa ctgtctaaac
     2161 ggaacggggc gtggtgattt aggtaaagct tccaccacta cacggatgcc gcaggacggg
     2221 aacaggagag cgcaagaggg agccaccagg gggaaacgcc tggtatcttt atagtcctgt
     2281 cgggtttcgc caccactgat ttgagcgtca gatttcgtga tgcttgtcag gggggcggag
     2341 cctatggaaa aacggctttg ccgcggcctt atcgtatccc tgttaagttt cttcctggca
     2401 tccaccagga aataaatttc cgccccatta gtaagcctgc accgctcgcc gcagccgaac
     2461 gaccgagcgc agcgagtcag tgagcgagga agcggaatat cacctgaacc agcatcttct
     2521 cctgacgccg gaaagcctca tttcactcct gccacatgaa gcactttggc aaatcaccac
     2581 ttcggtttaa aatatttagc cagtatgcac tccgctagcg ctacgtgact ggttcagggc
     2641 tgcgccccga aacccgctaa cacccctcag ctactggata tcacaccatg ccatctgagt
     2701 atgatgaaca accggatgcg actgatgctc tgtttcccgg cgaatatgac ctttttgact
     2761 taatggctca tgttactgaa gagaacctgc acgccccggt ggattctggc ccgcctgtcg
     2821 gccgggaagc gttatagctt tttcgctggc cagcgtacat gtaatacgct ggtattacat
     2881 gttatttgtt tattttcatg ttgttacaga tgattgtaat acgttgcgta ttacgctaat
     2941 acacgaaata actccatttt tttcatttaa ttcatgcagt tgcgataaaa atcgcggctg
     3001 cgttaggtgt atgaccattt aaggggcaaa aaattatcat tctggctggg tgatctgcgc
     3061 aggttaagga tcatcggcga cgaaaaagcg tctttaactg cttcgttcat gcttgcatga
     3121 acggattatt tttccagact acaggtaaac tacaggaaga ctacaaaagt tgatgattta
     3181 atcctgcgtt ttagtgcgat gactacagat aaactacaaa ataactacag gataacctca
     3241 gatccgttct ctgaaccatt cgtacatccg acccccttac cggtttacac tgagcactga
     3301 tgctctgagg gcccttatga cgaaacaaca gaaaacagcg ctgaacatgg ctaaattcat
     3361 ccagaatcag tctctgctcc tgctggagaa gcttaacgag cttgatctcg atgttgaggc
     3421 ggacctttgt gagaaactcc acgatgatgc ggagcatctt ttccgtacac tgtcctcgag
     3481 actggatgca ttacaggatg gtaactgatg gccagagtgt ctattagtga ggctgcccga
     3541 ctgacgggta agagtagaac aacactgcac aggttaatta aagcaggtga cctgtccacc
     3601 tgtagcggtg aacgcaatgc aaaaatggta gatacttcag agcttttacg tgtctttggt
     3661 ccctttgaac aaccgaaggg tgaacaccat tctggacagg tctctggaca gcgtgataca
     3721 gcctctgctg accagagtga acaggtgatt cgtcatctga aacaggagat tgaacacctg
     3781 aacaccttac ttttgtccaa ggattcgcac attgacagcc tgaaa
//
