LOCUS       NZ_LR890552             4660 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF142 isolate INF142 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890552
VERSION     NZ_LR890552.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357050
            Assembly: GCF_904865785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 12:05:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,698
            CDSs (total)                      :: 5,575
            Genes (coding)                    :: 5,420
            CDSs (with protein)               :: 5,420
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 51 of 155
            Pseudo Genes (incomplete)         :: 103 of 155
            Pseudo Genes (internal stop)      :: 16 of 155
            Pseudo Genes (multiple problems)  :: 15 of 155
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890552.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4660
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF142"
                     /isolate="INF142"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2013-08"
     gene            complement(136..1836)
                     /locus_tag="JMX11_RS28375"
     CDS             complement(136..1836)
                     /locus_tag="JMX11_RS28375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697690.1"
                     /GO_function="GO:0019239 - deaminase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-phage dCTP deaminase"
                     /protein_id="WP_225368539.1"
                     /translation="MSLARKLREKRSNPIHSANEDSSGGDSINQITSRQSMDLVIGFCG
                     AVGSGIKSIVDVTEEELDDLGYDVYRIRVSELMQKLFSEWRDDIVTPFDRYHKLQDFGD
                     ALRNKYYPHILSEAVIHEIKIEKGIDTSSKKNKKAFLVDQLKHQDEIELLRMVYQHNFY
                     LLGVIRSEVERKRNLRDEGLSKSEVDIVIHHDRKSESDYGQQTAKAILDSDYFVKNNQG
                     QRAHLKAKVKRFIGLIHGLNGLTPTTYEKGMYAAHSASLQSACLSRQVGAAILDVNGNL
                     ISVGRNDVPKFNGGLYSADDGVNDHRCVYKGGKCYNEVRKLKIKSKISQILMSESACEL
                     GVKLTEDQAEQLADVIYKKTPVSSIIEYSRSIHAEMDAITSLARLGNGGFSDKVLYTTT
                     FPCHNCARHIVAVGITKVVYIEPYEKSLALELHDDAITEVNEHGKVIFESFEGVSPRRY
                     QKFFFSTDERKDSFGNAEKYSTKYKNHIDIQFIDSYLDFENRVVDIFRTNTNIDSGNHV
                     GRTDSTINLSSQPVPPVPPVPPVPPVPPVPPVPPVPPVPPVPPVPPDSK"
                     /name="anti-phage dCTP deaminase"
     gene            complement(1849..2031)
                     /locus_tag="JMX11_RS28380"
     CDS             complement(1849..2031)
                     /locus_tag="JMX11_RS28380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_080882243.1"
                     /translation="MGKELSLNKIYDKNSRYINDSRGHELGKEKKVFDFEVEMIKKRRE
                     DAIRKIIEDSKSLKW"
                     /name="hypothetical protein"
     gene            2419..2628
                     /locus_tag="JMX11_RS28385"
     CDS             2419..2628
                     /locus_tag="JMX11_RS28385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgH/BhsA/McbA-like domain containing protein"
                     /protein_id="WP_009310047.1"
                     /translation="MKSIKTFVAVAALSMMSFGAFAQSVSATASTLDRAEAKIAAQAAE
                     QGASYKITSAQFNNRVHMTAELTK"
                     /name="YdgH/BhsA/McbA-like domain containing protein"
     gene            complement(3471..3872)
                     /locus_tag="JMX11_RS28390"
     CDS             complement(3471..3872)
                     /locus_tag="JMX11_RS28390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_009310048.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3872..4063)
                     /locus_tag="JMX11_RS28395"
     CDS             complement(3872..4063)
                     /locus_tag="JMX11_RS28395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          4185..4592
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.355"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gcgctcctct aagccagtta ccttggttca tagagccgca aactctagaa ccttaaaaaa
       61 accgccccgc aaaggcggtt tttttctttc tcgtctcaag gttaagctct gtataacatc
      121 agagtcaaca gatcttcatt tcgagtctgg tggtactggt ggtactggtg gtactggcgg
      181 tactggcggt actggcggta ctggcggtac gggcggtacg ggcggtacgg gcggtacggg
      241 cggtacgggc tgggaagata aattaatagt cgaatcagtt ctcccgacat gattgccaga
      301 atcaatattt gtgttagttc taaaaatatc aacgactcga ttttcgaaat ctaaatagct
      361 atcaataaac tgtatatcaa tgtgattttt atatttagtg gagtactttt ctgcgttacc
      421 gaaactatct ttcctttcat ctgtagaaaa gaagaatttt tgatacctac gaggtgatac
      481 accttcaaag gattcaaata taaccttccc atgctcattc acctcggtta tagcatcatc
      541 atgcaattct aaagcgaggc ttttttcata tggctctata taaacaactt ttgttattcc
      601 aacagcgaca atatgtctcg cgcagttatg acaaggaaat gtggttgtat ataaaacttt
      661 atcagaaaaa cctccattac ctagtctagc taatgatgta atagcatcca tctctgcatg
      721 aattgagcga gagtactcta taatagaaga tactggtgtt tttttatata ttacatcagc
      781 cagttgctct gcttgatctt ctgttaattt aacaccaagt tcacaagcgc tttccgacat
      841 aagtatttgt gaaattttgc ttttaatctt tagttttcta acttcattat aacatttacc
      901 acctttgtat acacaacgat gatcattgac accatcatcc gcactataaa gcccaccatt
      961 gaatttaggt acatcattac gcccaacgga aatcagattc ccattaacat ccaatatagc
     1021 agcaccaact tgacgagaaa ggcatgcaga ttgcagagat gctgaatgag ctgcatacat
     1081 acctttttca tacgtggttg gagttaaacc atttagccca tgtatcaagc caataaaacg
     1141 cttaacctta gccttaaggt gcgccctttg tccttgatta ttcttaacaa aataatcaga
     1201 gtcaagtata gctttcgcag tctgctgacc ataatcgctc tctgattttc tatcgtgatg
     1261 aataactata tcgacttctg acttactcag cccttcatct ctaagattac gctttctttc
     1321 tacttcactt ctaattacac ctagtaaata aaaattatgt tggtagacca tccttaaaag
     1381 ttcaatttca tcctgatgct tcaactgatc gaccaaaaaa gcctttttgt tttttttact
     1441 tgaggtgtca atgccttttt ctatttttat ttcatggatt acagcttcag atagtatatg
     1501 tgggtaatat ttatttctta acgcatcacc aaaatcttgc agcttatgat atctatcaaa
     1561 cggagtaaca atatcatcac gccattctga aaaaagtttt tgcataagct cgctaactct
     1621 tatgcgataa acatcatatc ctagatcatc tagttcttct tcagtcacat caacaattga
     1681 ctttattcct gagccaacag caccgcaaaa tcctataaca agatccatag actgtctgga
     1741 ggttatttgg tttatgctat cccctccaga ggagtcctcg ttagcactat gaatcggatt
     1801 acttcttttt tctcttaact ttctagccag gctcataaaa gacctcactt accattttaa
     1861 tgattttgaa tcctcaatta tcttccttat agcgtcctct cttctttttt taatcatttc
     1921 aacttcaaaa tcgaaaactt tcttttcctt tcccagctca tgccctctag aatcattaat
     1981 atatctagaa ttcttatcat aaattttatt tagagatagc tctttaccca tcacaccctc
     2041 ctgcaagacg catggatttt actgttatct ttataacagg caatagccaa gaaacgtaat
     2101 cgatagagat ttttttttct tatcctaaac attaggaaat tcggcaagag aaaagcaaga
     2161 gagattacgc caaactaacc attatttttc aatttgttaa aataaaatca tcaatgttaa
     2221 catttctatc caccacctca tttggtacct aaaatccaga gataaacctc tggtcttgat
     2281 gcgctcaatt cttgttcttt ttttttgaat gatatccgca aattgtttcg attttaatca
     2341 actaatggtc gtcctatcat ttatcacatc agggcaacaa cgccccatac agaacaaaat
     2401 cacttaagga atacgaccat gaaatccatc aaaactttcg ttgcagttgc cgctctatcc
     2461 atgatgtctt tcggtgcttt tgctcagagc gtcagcgcta ccgcctccac cctggatcgt
     2521 gctgaagcaa aaattgccgc acaggccgct gaacaaggtg cgtcatacaa aatcaccagc
     2581 gctcagttca ataaccgtgt ccacatgacg gctgaactga ccaaataaga tggtcgcaaa
     2641 gggagctgcc gaacaggccg ccgggaggcg gcccgtttcg tcccttagca ggaaaacctt
     2701 caggcccctt ctggggcttt tttgcatctg ttatttaaca taaaggcatg attgtacgca
     2761 ccgctaaaac ggcctcaggg cgtttctgac ggaaaaccgg taaaacaggc aacaaaccac
     2821 ccgaaaaccc gccagaaacg cgcaggctct gtttttacgg catgcatgag tatgcacgca
     2881 agtgcatagc gcgaaaattc acgccattca gccagagtaa gtcctgtttc cggcgttctt
     2941 tccatccgaa aacggtgaac ggggacgcaa tttattgcgt ggccgtgaag cgttgccggc
     3001 gcagccggaa aaccggtttt cagcacgttc aggaatcggg ttcgtcgacg gccggcaatc
     3061 acgttatggc aagtcgccgg acgactcacc acacgattca ccggcgactc ttcactagag
     3121 tcgtacccag agtcgccgcg tctaaaaaac aaccaaacgg ggagtcgtgt ctagagtcgg
     3181 gtcgttatta acttattgtt tttatagtcc tgagtcgtta ccgactctat gacgactcgc
     3241 cggggactct atgacgagtc gtcatagagt cggatctata taaataaaat ttaaaaaacg
     3301 aaatttcagg aaagtaaccc actgatatta aatacaaatc tgcaaaatat taattttgcg
     3361 tggggtgtgg gtatttttag tggtgaggag cgttcagaga tctgacgatt tttgggaagg
     3421 ttcaggaact ccccgggatg gccggagagg aaaacggaag catgacgggg tcaggatttt
     3481 ttccagaatt tccaccatgg cgccggggat tcagttaatt ttgcctggtg attttcgaga
     3541 aggagcatgg cctgtttcag gctgtcaatg tgcgaatcct tggacaaaag taaggtattc
     3601 aggtgttcaa tctcctgttt cagatgacga atcacctgtt cactctggtc agcagaggct
     3661 gtatcacgct gttcagagac ctgtccagaa tggtgttcac ccttcggttg ctcaaaggga
     3721 ccaaagacac gtaaaagctc tgaagtatct accatttttg cattgcgttc accgctacag
     3781 gtggacaggt cacctgcttt aatcaacctg tgcagtgttg ttctactctt acccgtcagt
     3841 cgggcagcct cactaataga cactctggcc atcagttacc atcctgtaat tcatccagtc
     3901 tcgaggacag tgtacggaaa agatgctccg catcatcgtg gagtttctca caaaggtcgg
     3961 cctcaacatc gagatcaagc tcgttaagct tctccagcag gagcagagac tgattctgga
     4021 tgaatttagc catgttcagc gctgttttct gttgtttcgt cataagaagc ctcagagcgt
     4081 cagtgctcag tgtaagaaca gtctcttttc cgcttcctcg ctcactcagt cgctacgctc
     4141 ctgccgttcg gctgcggcga gcggcaggag catgcgtgta aaagctcgag aaaaccgagc
     4201 ggtctcgtga tggggaaaag gaaaggccgc acagcggccg tttttccata ggctccgccc
     4261 ccctgacgag catcacggaa tctgacgctc aaatcagtgg cggcgaaacc cgacaggact
     4321 ataaagatac caggcgtttc cccctgatgg ctccctcgtg cgctctcctg ttcctgccat
     4381 tcggtttacc ggtgtcattc cgctgttatg gccgcgtttg tctcattcca cgcctgacac
     4441 tcagttccgg gtaggcagtt cgctccaagc tggactgtat gcacgaaccc cccgttcagt
     4501 ccgactgctg cgtcttatcc ggtaactatc atcttgagtc caacccggta agacatgcaa
     4561 aagcaccact ggcagcagcc accggtaact gatttagagg agttagtctt gaagttatgc
     4621 gccagttaag gctaaactga aagaacaagt tttggtgact
//
