LOCUS       NZ_LR890499             1916 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF018 isolate INF018 plasmid 7,
            complete sequence.
ACCESSION   NZ_LR890499
VERSION     NZ_LR890499.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3356961
            Assembly: GCF_904865825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:16:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,096
            CDSs (total)                      :: 4,978
            Genes (coding)                    :: 4,878
            CDSs (with protein)               :: 4,878
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 38 of 100
            Pseudo Genes (incomplete)         :: 59 of 100
            Pseudo Genes (internal stop)      :: 18 of 100
            Pseudo Genes (multiple problems)  :: 14 of 100
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890499.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF018"
                     /isolate="INF018"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="7"
                     /geo_loc_name="Australia"
                     /collection_date="2013-04"
     gene            582..818
                     /locus_tag="JMV82_RS25400"
     CDS             582..818
                     /locus_tag="JMV82_RS25400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1077..1379)
                     /locus_tag="JMV82_RS25405"
     CDS             complement(1077..1379)
                     /locus_tag="JMV82_RS25405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     Typing          244..417
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(2..265)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.233"
                     /coverage="80.0"
                     /evalue="9.8e-106"
     Typing          complement(1484..1906)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.035"
                     /coverage="85.0"
                     /evalue="2.34e-111"
ORIGIN
        1 cacgagggag ccaccagggg gaaacgcctg gtatctttaa gccgcatcgg gtttcgccac
       61 cactgatttg agcgtcagat ttcatgatgt ttgtcagggg ggcggagcct atggaaaaac
      121 ggcttcgccg cggccttatc tcttccctgt taagctcctt cctggtatct cccaggaaat
      181 ttccgccccg cctgtaagcc ggcaccgctc gccgcagccg aacgaccgag cgcagcgagt
      241 cagtgagcga ggaagcggaa tatatcctgt actacatatc ctgctgacgc gctggtgccg
      301 ccttttttct cctgctacat gaagcacttc actgatttcc acatccgtgc caacatagtc
      361 agccagtata cactccgcta gcgctacgtg actggttcag ggctgcgccc cgaaacccgc
      421 taaaagctaa tgacgcgcct gcggcttgtc caacgcctca cggcaccgga ttaaaatccg
      481 ctcccgttca ccgtttctga ctgcctttca ccgtcgctgg cgcttcatcg tttctactgt
      541 gtctggcaga ctgtgctgat ttattctgac tggagaacgt tatggccaga ctgacaaact
      601 tgacgcctgc agagaaaaaa tttcttgatg atgctgttgc cgcagctgaa agagcgtcag
      661 gtaaaaagct aaatcagcct aaccggcaca tcgtcctgaa cagagcgcgt gcgcaaattg
      721 agttgcagcg ttacgccgac cgccagcgtg cattacgtga ggatgagcgg cagcagtccg
      781 attttgcctg gtcacgtccg cgcgcgccgc gccgctgatt ttggcttttg gcggtttagt
      841 ggtgctgacg ctgcgaaatc acctgccatt cacctgcgtg catagccatg cagtcgcgca
      901 gaaatcatca ggggcgtttt tccgggatac tggtgaggaa aggtgctgga aacggccctg
      961 atgcagcagg attgcgctga gggcgcctgc gggggtgcgg gcaagggatg ttatgtttaa
     1021 tcggtctgac cgtcaggtac aaaaaaagcc cttagggggc ttttttttgc tatgagttag
     1081 ccatattttc gtgcgaattt ttcatcggaa tcgcatagat aaataataaa ctcaataaac
     1141 gcgatgatcg cgggtatgaa tgtccagcaa aaaattagat acaggaaccc ctgtcctatt
     1201 tttcctaagt aaaatttatg tgcgccaaat ccaccaagga agaatgctaa tagcgcggct
     1261 gcgattctac ttttttcacc tgaacctgaa gaggcgtttg tggctccgca gtgcgggcat
     1321 gactttgctg tttcgtgtat ttccttgcca catcctcggc agtaaaccat tgaactcatt
     1381 ttttatcctc gagcttattt taattgggat cataatatcc gatgttttat aacgatgtgt
     1441 atcctatgtg ctcggattgg atagatttcc attacggtga aggatcttct tgagatcctt
     1501 tctgtggcgt cgtaatctct tgctctgtaa acgaaaaaac cgccctgcaa ggcggttttt
     1561 cgaaggttct cagagcagca actctttgaa ccgtggtaac tggcttacga ggagcgcagt
     1621 aaccaaatct gttctttcag tttagcctta acaggcgcat aacttcaaga ctaactcctc
     1681 taaatcagtt accagtggct gctgccagtg gcgataagtc gtgtctttcc gggttggact
     1741 caagatgata gttaccggat aaggcgcagc agtcggactg aacggggggt tcgtgcatac
     1801 agtccatcca ggagcgaact gccttcgcgg aactgagtgt caggcgtgga atgagataaa
     1861 cgcggccata acagcggaat gacaccggta aaccgaaagg caggaatgcg ggggag
//
