LOCUS       NZ_LR890498             2936 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF018 isolate INF018 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890498
VERSION     NZ_LR890498.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3356961
            Assembly: GCF_904865825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:16:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,096
            CDSs (total)                      :: 4,978
            Genes (coding)                    :: 4,878
            CDSs (with protein)               :: 4,878
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 38 of 100
            Pseudo Genes (incomplete)         :: 59 of 100
            Pseudo Genes (internal stop)      :: 18 of 100
            Pseudo Genes (multiple problems)  :: 14 of 100
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890498.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF018"
                     /isolate="INF018"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2013-04"
     gene            424..615
                     /locus_tag="JMV82_RS25380"
     CDS             424..615
                     /locus_tag="JMV82_RS25380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004207910.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDSLQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            615..1037
                     /locus_tag="JMV82_RS25385"
     CDS             615..1037
                     /locus_tag="JMV82_RS25385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_004207907.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKDIKVID
                     VSELIRVFGSLDGVTDTVKYDVKSDAISTEVNTIGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHDPSSPAHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1763..2068)
                     /locus_tag="JMV82_RS25390"
     CDS             complement(1763..2068)
                     /locus_tag="JMV82_RS25390"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058876158.1"
                     /translation="MMKVGNVREYGPTKSHLLLMVTTLPAGVGVFIYPIVEVIWGDLSL
                     LKVAGYTFLSLIVGGLLANIIVRGLSATTFGILLVNPLAMICSIAGLIVLAIQHLP"
                     /name="hypothetical protein"
     gene            complement(2125..2502)
                     /locus_tag="JMV82_RS25395"
     CDS             complement(2125..2502)
                     /locus_tag="JMV82_RS25395"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_110982627.1"
                     /translation="MIHNHPTWVIKSMIYRLGILSISLLTVGCVSTSNVLELGRDTYTV
                     SATADGFRDAASARQSAFKTGSEKCNSLGKKFLLTNENVANTRMGIDTTVTLYFRCLDE
                     RDSEYVRPNLQKAPDLRIESK"
                     /name="hypothetical protein"
     gene            complement(2792..2935)
                     /locus_tag="JMV82_RS25595"
     CDS             complement(2792..2935)
                     /locus_tag="JMV82_RS25595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_085409091.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHDLSPLAAATGNGFAEQRNV
                     EV"
                     /name="replication initiation protein"
     Typing          complement(2..257)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.109"
                     /coverage="85.0"
                     /evalue="8.74e-115"
     Typing          complement(2646..2936)
                     /name="rep_cluster_2374"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.553"
                     /coverage="98.0"
                     /evalue="9.17e-70"
ORIGIN
        1 cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg aatgagataa
       61 acgcggccat aacagcggag tgacaccggt aaaccgaaag gcaggaacag gagagcgcac
      121 gagggagccg ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccacca
      181 ctgatttgag cgtccgtttc tgcgatgctt gtcagggggg cggagcctat ggaaaaacgg
      241 caacgccgtg gcctttcctt tttttcctcc ttttcctcct ttgaccgctc ggttttctcg
      301 agcttttcta tgcatgctcc tgccgctcgc cgcagtcgaa cgaccggagc gtagcgactg
      361 agtgagcgag gaagcggaaa agagacaggt tttacactga gcactgacgc tctgaggccc
      421 tttatgacga aacaacagaa aacggcgctg aacatggcta aattcatcca gaatcagtct
      481 ctgctcctgc tggagaagct taacgagctt gatcttgatg ctgaggccga cctttgtgag
      541 aaactccacg atgatgcaga gcatcttttc cgtacactct cctcgagact ggattcatta
      601 caggatggta actgatggcc agagtgtcta ttagtgaagc tgcacggctt gttaaggtta
      661 gtcgtcccac tatttacaag atgattaaca gcgggaagtt aagttatacc tctgttgtaa
      721 agcacgggaa ggatattaaa gttattgatg tatccgagct tattagggtg tttggttctc
      781 ttgatggtgt aactgatact gtaaaatatg atgtaaaaag tgacgcaatt tctacagagg
      841 ttaacaccat tggtttacat gatttacaac atagaatcgc tttacttgaa gctgaaaacg
      901 atggtcttaa aggggctgtt aaagcacgcg atgagcatat tgattccctt cgccaggcta
      961 tgcagctttt ggagcacaag cacgacccct cttcaccggc tcattctccg tggtggaaat
     1021 tctggaaaaa atcctgatcc tgccatgttt cagttttgct ctccggcgat cccggggagt
     1081 tcctgaacct tcccaaaaat cgccagatct ctgaacgctc ctcaccacta aaaataccca
     1141 caccccacgc aaaattaaaa ttttgcagat tccttattta caacaatggt ttaatgaaaa
     1201 ataaatgtgc ggtgatgtgt tacaaagtgc agatccaagt cgtggacgac tctatggcga
     1261 atcgctgacg aattgcccac gattcatatg tgaatcacgc tttattatca tattgttatg
     1321 atgaatcgac tcttgattca attcatcact ttgggtgttt tttgttcatg gtgactcttg
     1381 attcaattca cgattcgaat cgccggtgaa tcgtgtgcta agtcgtccgg tgacttgcca
     1441 taacgtgatt gccggccgtc gacgaacccg attcctgaac gtgctgaaaa ccggttttcc
     1501 ggctgcgccg gcaacgcttc acggccacgc aataaattgc gtccccgttc accgttttcg
     1561 gatgggaaga acgccggaaa caggacttac cccggctgaa tggtgttaat ttccgcgcta
     1621 tgcacttgcg cgcatactca tgcatgccgt aaaaacagag cctgcgcgtt tctggcgggt
     1681 tttcgggtgg tttgttgtct gttttaccgg tttcccgtca gaaacgccct gagagcctct
     1741 caggcggtgc tgataacgga tgttatggta aatgttggat agcaaggact atcagtccgg
     1801 caatgctaca tatcattgct aatggattta cgagcaaaat gccgaatgtt gtcgcagata
     1861 atccgcgaac aatgatattg gcaagaagtc cgccaacaat gagggataaa aaggtataac
     1921 cagcaacttt cagtaacgac agatctcccc atatcacctc tactatcgga tagataaaaa
     1981 caccaacgcc agcaggaagc gtagtaacca tcaacagtaa atggctttta gtgggaccgt
     2041 actctctgac atttccaact ttcatcatgt gtgtgatgaa tgacgatatc caccatagga
     2101 tcatgatcat aaggaaattc ataattattt actctcgatg cgtagatcag gtgctttctg
     2161 tagatttggt cgtacatact cgctgtctct ttcgtcaaga caacggaagt agagtgttac
     2221 tgtggtatct atccccattc ttgtgttagc cacgttttcg ttagtgagca ggaatttttt
     2281 accgaggcta ttacatttct cagaacctgt tttaaaggca ctttgacgtg ctgatgccgc
     2341 atctctaaaa ccatcagcag ttgctgaaac cgtatatgta tccctaccta actcaagaac
     2401 gttgctggta gaaacacaac caactgtaag cagcgatatt gataaaatac ctaacctata
     2461 aatcattgat tttattaccc aagttgggtg attgtggatc atgattatat ctgttttttt
     2521 tattattaaa atcaaggggt tcaataattt tcttcaaaga actggtgtcg tggagtggtg
     2581 ctggtttccc tttggggggg agagggatgg aataggatcc tcttgagatc ctttctgttg
     2641 cgtcgtaatc tcttgccctg gaaacgaaaa aaccgcccag caaggcggtt ttttcgaagg
     2701 ttcttagagc agcaactctt tgaaccgagg taactggctt tcgcagagca cagaaaccaa
     2761 attagttatt acagtgtagc tgtacttcac ctcacacttc aacatttctt tgttctgcga
     2821 atccgttacc agtggctgct gccagtggcg ataagtcgtg tctttccgga ttggactcaa
     2881 gacgatagtt accggataag gcgcagcagt cggactgaac ggggggttcg tgcata
//
