LOCUS       NZ_LR890496             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF018 isolate INF018 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890496
VERSION     NZ_LR890496.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3356961
            Assembly: GCF_904865825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:16:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,096
            CDSs (total)                      :: 4,978
            Genes (coding)                    :: 4,878
            CDSs (with protein)               :: 4,878
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 38 of 100
            Pseudo Genes (incomplete)         :: 59 of 100
            Pseudo Genes (internal stop)      :: 18 of 100
            Pseudo Genes (multiple problems)  :: 14 of 100
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890496.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF018"
                     /isolate="INF018"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2013-04"
     gene            complement(498..830)
                     /locus_tag="JMV82_RS25345"
     CDS             complement(498..830)
                     /locus_tag="JMV82_RS25345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(998..1213)
                     /locus_tag="JMV82_RS25350"
     CDS             complement(998..1213)
                     /locus_tag="JMV82_RS25350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1217..1702)
                     /locus_tag="JMV82_RS25355"
     CDS             complement(1217..1702)
                     /locus_tag="JMV82_RS25355"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1737..2171)
                     /locus_tag="JMV82_RS25650"
                     /pseudo=""
     CDS             complement(<1737..2171)
                     /locus_tag="JMV82_RS25650"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2380..2703)
                     /locus_tag="JMV82_RS25365"
     CDS             complement(2380..2703)
                     /locus_tag="JMV82_RS25365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(499..830)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2800..2991)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          13..458
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.159"
                     /coverage="84.0"
                     /evalue="8.55e-101"
     Typing          2971..3223
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.308"
                     /coverage="91.0"
                     /evalue="1.94e-52"
     Typing          complement(901..2390)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gctcccccgc attcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcggtt
       61 tctcattcca cgcctgaaac tcggttccgg gtaggcagtt cgctccagga tggactgtat
      121 gcacgaaccc cccgttcagt ccgactacca cgcccgttcc ggtaactatc aacttgagtc
      181 caacccggaa agacacgaca aatcgccagt ggcggtagcc attggtaact gggttcacgg
      241 agcagagatt gtagagaatg cctacagagt tcttgaagtg aaagcctgag tgcggctaca
      301 ctgaaaggac agtttaggta tctgcgctcc gtgaaagcca gttaccatcg gaacaaagag
      361 ttggtagctc tgaattccgg caaacgaacc accgttggta gcggtggttt ttttgtttac
      421 agggaaaaag attacgcgca gaaagaaagg atctcaagga aatccttttg ctttggccaa
      481 tatgcttcgg taaaaagtta atgcgcagaa gattttgaaa aaatattaat aaccaaaact
      541 ccaacgcaaa taaggaacat tcctgcaatt gcgggccaat caagtttttg accgctaacc
      601 aaccaaccag ctaggcttat tagtacaatt cccgcaccag accaaattgc gtaagcaata
      661 ccggtaggta tattttccaa tgtttgggaa agcagataaa aggcagcgca ataacttatt
      721 gcagttccta cagacggcca caggcgtgta aatccttctg aatatttcat aaaggtggtg
      781 cctatgactt cagccacaat agcccctccc aggaaaatat atgtattcat aaaaatacct
      841 catgttgaaa aatttaaata tctttacata acaactaatt aatagaaccc ggcttatcat
      901 agcgaaggac catgatgctg ccactgcgat cgttccagct ccagcgcttt ctggtgctgc
      961 accgcccgct cctgctgccg gtgagtttct atcgcgttca gcctttcgac aaccggcgca
     1021 gctgctcgct caaactctgc acctgcctgc tcaagaccgt gacgcgctcg ttcagcgccg
     1081 cgttctcccg ttgaataaga ccagacatcg tccgccattc cgcgaaggcg ttctcccact
     1141 cgtccagcct tttcgagtag tcctgctgta gctgctctaa tgcgctcagc aactgttttt
     1201 ccagctccgt catgtgctat ttccccgcca gtatcatcca gctcgagtcc tctccgaact
     1261 gtcccgcttc cgggttcacc ctcacgcagc ggcgtctctg ctcgccgcag gtcgagagct
     1321 gtacgccgct gttcctctct gacagcatgg cctgcgtgct cttctgctcc cggatggtcg
     1381 tatagttctc gagtatctgc tgcccctgcc accacagaat gcccgcgctc gacgctatca
     1441 gcagcgcgga gaccagaacg atggtcagcc acgtctggct gaccatgcgc agcatccctt
     1501 tcgtgcgctg gctcatggct gaggacagct tccggtcgtg gtcgaggatg gcggcgctga
     1561 ttctcttctc gctttcgctc agttccgctc tgacagactt ctcgtgctcg ctgaatgcgg
     1621 ctttcagcat ctcgccggta gtctgctgct gcgctttcga tttctgctct aagtccttcg
     1681 ccagcgttaa aagactgttc atagatggct cccttcagtc ggatgtttcg ccccccgtcc
     1741 gggtcggcaa tgctgatgct gctttttgtg gtgcgcacca cctcaaaacc tgcgctttcc
     1801 agcgcctcag tgacgtcctg acgcgttttc agctccccgg atgaggcaag ggcaagcagg
     1861 ccgctcgtaa tcgcctgggc ggcttcctgc ttcgcttccg gcagcgcgga aggcgagacc
     1921 agcacccgcc ggttctccgg cgcgttcggg tcatgcagcc ccagcctgcc gttcactatg
     1981 gtctgccagg catcgatgcg cggacggtcg gcgcggtcgt aatacggctg tagccgcttg
     2041 ccggtcagaa gctccgtgtt cgggatcagg aagttcagct ccagccgccc cttgtcccgg
     2101 tgctcaaccc acagcacgct gtactggtct ttatcgagtc cgggcatcag aacccgctcg
     2161 aaactcgcca tcagcttttc gcgctggccg ggcggtaaat cctgttcggc aaaagacaga
     2221 acgccggaag tgtacttttt ggcgtagggc gaggcgtcga taagctcccg gacttcatcc
     2281 ggcttcccct gcagaacgct ggcgccgtcg cgctggcgat ctttacccag cagataatcg
     2341 accggcccgc cgccgccgcc gcgcccccga ggatgaaact taacgatcat catcagcacc
     2401 cttttccagt acggcatgcc gcaaccgctc gagtccggca tcgatggcca tcagcgcggc
     2461 gacaatctgc acgcggtcgt gtccgcttcc accaccggcg ttaacctggc gggcaatctg
     2521 gttaaggttg ttccccatgc cggcaagctg acgaagcagc gccggcgaga tcgacggaag
     2581 tttgccggcg cgtgcgggct tctcgtccag gcacgtctgc cgcatccagg ccgcgagttg
     2641 cttaccctcg cagcgctcca gcagacgccg gtgctcgtcc tcagtcaccc acatggtgag
     2701 cattttgctg cgtttgtctg ccaatccggc ctcctgataa cgccgggacg gacgggaaat
     2761 cttttcccgg tcggcacggt gttggacaag ccgcaggcgc ggcagtggtt ttagcgggtt
     2821 tcggggcgca gccctgaacc agtcacgtag cgctagcgga gtgtatactg gctaaacatg
     2881 ttatgacgga gtggcaattt atgaaagtgc ttcatgtgac aggggaaaaa tgcggctgcc
     2941 gggcgtaagt gcaaaatgca ggtggtgatg aaatgacgcc tcctcgctca ctcggtcgct
     3001 acgctcctgc cgtgagactg cggcgggcgt taccagctca cagattacgg gataagcaaa
     3061 tgccgctcga agcaggaaag gccaagaaaa ggatgcggag ttgccgtttt tccataggct
     3121 ccgcccccct gacgagtatc acgaaaatga cgctcaaatc agcggtggcg aaacccgatg
     3181 cggcttaaag ataccaggcg tttccccctg gtggctccct cgt
//
