LOCUS       NZ_LR890495             3549 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF018 isolate INF018 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890495
VERSION     NZ_LR890495.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3356961
            Assembly: GCF_904865825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:16:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,096
            CDSs (total)                      :: 4,978
            Genes (coding)                    :: 4,878
            CDSs (with protein)               :: 4,878
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 38 of 100
            Pseudo Genes (incomplete)         :: 59 of 100
            Pseudo Genes (internal stop)      :: 18 of 100
            Pseudo Genes (multiple problems)  :: 14 of 100
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890495.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3549
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF018"
                     /isolate="INF018"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-04"
     gene            complement(340..495)
                     /locus_tag="JMV82_RS25315"
     CDS             complement(340..495)
                     /locus_tag="JMV82_RS25315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008323621.1"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="WP_071561715.1"
                     /translation="MKKLLFLGVVTVSVVLAACQVNNVRDTGGGAVSPSSTVTGVTLDS
                     GTNGNP"
                     /name="colicin release lysis protein"
     gene            complement(603..860)
                     /locus_tag="JMV82_RS25320"
     CDS             complement(603..860)
                     /locus_tag="JMV82_RS25320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="WP_025714833.1"
                     /translation="MAGNKISDFTEEEFTAFVSKIIAADFPTDKENDDAIYSFAQLTEH
                     PAGWNLIFKPKVGEDSSAKGIVKTVKEWRAANGKPGFKKA"
                     /name="bacteriocin immunity protein"
     gene            complement(862..>1464)
                     /locus_tag="JMV82_RS25325"
                     /pseudo=""
     CDS             complement(862..>1464)
                     /locus_tag="JMV82_RS25325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178051.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="klebicin B-related nuclease bacteriocin"
                     /name="klebicin B-related nuclease bacteriocin"
     gene            <1463..1804
                     /locus_tag="JMV82_RS25330"
                     /pseudo=""
     CDS             <1463..1804
                     /locus_tag="JMV82_RS25330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178052.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(2552..2974)
                     /locus_tag="JMV82_RS25335"
     CDS             complement(2552..2974)
                     /locus_tag="JMV82_RS25335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_025714834.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTSINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKREPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2974..3165)
                     /locus_tag="JMV82_RS25340"
     CDS             complement(2974..3165)
                     /locus_tag="JMV82_RS25340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032413520.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2..134
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.254"
                     /coverage="92.0"
                     /evalue="1.92e-61"
     Typing          3214..3549
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.608"
                     /coverage="92.0"
                     /evalue="8.33e-106"
ORIGIN
        1 ttcgctccaa gctggactgt atgcacgaac cccccgttca gtccgactgc tgcgccttat
       61 ccggtaacta tcgtcttgag tccaacccgg taagacatgc aaaagcgcca ctggcagcag
      121 ccactggtaa ctgatttaga ggagatggac ttgaagttat gcgccggtta aggctaaact
      181 aaacgaacaa gttttggtga ctgcgctcct ccaagccagt taccttggtt caatcacctg
      241 caagtgtttg aaccttcgaa aaaaccgccc gccaaggcgg ttttttcgtt tacagagcaa
      301 gagattacga cgatccaaat gggatctcaa gaagatcctt tacggattgc cgttcgtacc
      361 gctatcaagc gtgactccgg tcaccgtcga tgaaggtgaa acagccccac ctccggtgtc
      421 tcgaacatta ttgacctgac atgctgccag aaccacagaa acggtaacaa cccctaggaa
      481 aagtaatttt ttcatatatc accttttatt tttattattc taggcaaatg gatatctagt
      541 aattattctt caaatccaga gttacaaatg agcgggctca taacttgaac ccgcaaattc
      601 aatcacgctt ttttaaaacc tggcttaccg ttagcagctc gccattcctt tacggtttta
      661 acaattcctt tcgccgaaga atcttcgcct accttaggct tgaagatgag gttccaacca
      721 gcaggatgct ctgttagttg ggcgaacgaa taaatagcat catcgttctc tttgtcagtt
      781 ggaaaatcag cagcgattat tttactaaca aaagcagtaa attcttcttc cgtaaaatct
      841 gaaattttat taccagccat tttattttcc tttatgtgtc tcaatatgat ttttaggtgt
      901 tagcgcctta atgttatcga catccataac agcccctcct tgagatattt ctttttcgtg
      961 gtgtaattca attttaacac gtttccctac tgattctaaa aagtccgcag taggtgccct
     1021 tccagctttc atctgattaa tatcagcttc actaaattgc ttgctcagtg cagaatcgtc
     1081 agcaaccgct ttccagaacg cccgacggaa agaatcaaaa ctaccgaaag tcttcccgcg
     1141 taatttatcc gcaatctggg aaggaacagg agcaccatcc ccggtactgg ccccccccat
     1201 ccagttattg ccaacgttct gccctttgcc gctcactgta ccgggcatgt tacgagggct
     1261 acggtacatc acatacagcg gttttaggcc ggattccgga ggaaacacca gaataatatc
     1321 gtcaaaatcg aggtcatccg ctaccggcgt cacggtttta tctgtagcct gtggcgccga
     1381 aatctgatca ccggtatgca gaatacgctc cggtagtggt accggcccgc ttagcgtcag
     1441 tggtccgttt gcaccaggtg cgtcaagtgc actagatttc accaggatgg cgcttaatca
     1501 ggaaaaatac ctcgatgact ttacatggaa agaactgaac gacgttatca acttcatacg
     1561 caaagcagaa ggtagtgcat ctgaccacag ctatgcactc cagttactgg agattaattt
     1621 caaggcaaac ccactggatc tcatctatca ccctgactgc tggttcaatg atgaagcatt
     1681 gtttcatgcc cggctgacta ccgaagaaat tggtggctac ttaatgaaaa aatcaggtcg
     1741 atggctcaac gatgcaccgg atatccaact ggtgtatgcc atcccccagg atgtttatga
     1801 ttaaccaagt caccatttac cataatccct taattgtacg caccgctaaa acggcctcag
     1861 gacgtttctg acgggaaacc ggtaaaacag gcaacaaacc acccgaaaac ccgccagaaa
     1921 cgcgcaggct ctgtttttac ggcatgcatg agtatgcgcg caagtgcata gcgcggaaat
     1981 tcacgccatt cagccagggt aagtcctgtt tccggcgttc ttctgatccg aaaacggtga
     2041 acggggacgc aatttattgc gtggccgtga ggcgttgccg gcgcagccgg aaaaccggtt
     2101 ttcagcacgt tcaggaatcg ggttcgtcga cggccggcaa tcacgttatg gcaagtcgcc
     2161 ggacgactca ccacacgatt caccggcgat tcgaatcgtg aattgaatca agagtcacca
     2221 tgaacaaaaa acgcccaaat tgatgaattg aatcaagagt cgattcatca taacaacatg
     2281 ataataaagc gtgattcaca tatgaatcgt gggcaattcg taaacgattc gccatagagt
     2341 cgtccacgac ttggatctgc actttgtaac acatcactgc acattaattt ttcattaacc
     2401 aattgtttta aataaggaat ctgcaaaatt ttaattttgc gtagtgtgtg ggtattttta
     2461 gtcgtgagga gcgttcagag atctggcgat ttttgggaag gttcaggaac tccctgggat
     2521 ggccggagag gaaaactcaa gcatggcagg atcaggattt tttccagaat ttccaccacg
     2581 gggaatgggg tggtgaagaa ggctcgcgct tgtgctccag aagctgcata gcctgacgaa
     2641 gggaatcaat atgctcatct cgagccttaa cagccccttt aagaccatcg ttttcagctt
     2701 caagtagagc gattctatgt tgtaaatcat gtaaaccaac gctgttaata cttgtagatt
     2761 ctgcgtcact ttttacatca tattttacag tatcgatgac accatcaaga gaaccaaaca
     2821 ctctaataag ctctgaagta tcaataactt taatagcctt cccgtgcttt acaacagagg
     2881 tgtaacttaa cttcccactg ttaatcatct tgtaaattgt gggacggcta accttaacaa
     2941 gccgtgccgc ttcactaata gacactctgg ccatcaatta ccatcctgta attcatccag
     3001 tctcgaggac agtgtacgga aaagatgctc cgcatcatcg tggagtttct cacaaaggtc
     3061 ggcctcaaca tcgagatcaa gctcgttaag cttctccagc aggagcagag actgatgctg
     3121 gatgaattta gccatgttca gcgctgtttt ctgttgtttc gtcataaagg gcctcagagc
     3181 gtcagtgctc aatgtcagac agatctcttt tccgcttcct cgctcactca gtcgctacgc
     3241 tcctgccgtt cggctgcggc gagcggtcgc aacgcgcaca taacgacata gagcagacag
     3301 ctcggagagg gagaaggcag cacagcggcc gtttttccat aggctccgcc cccctgacaa
     3361 gcatcacaga atttgacgct caaatcagtg gtggcgaaac ccgacaggac tataaagata
     3421 ccaggcgttt ccccctgatg gctccctcgt gcgctctcct gttcctgcca ttcggtttac
     3481 cggtgtcatt ccgctgttat ggccgcgttt gtctcattcc acgcctgaca ctcagttccg
     3541 ggtaggcag
//
