LOCUS       NZ_LR890449             3966 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF171 isolate INF171 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890449
VERSION     NZ_LR890449.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357101
            Assembly: GCF_904864625.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:22:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,406
            CDSs (total)                      :: 5,284
            Genes (coding)                    :: 5,162
            CDSs (with protein)               :: 5,162
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 50 of 122
            Pseudo Genes (incomplete)         :: 73 of 122
            Pseudo Genes (internal stop)      :: 22 of 122
            Pseudo Genes (multiple problems)  :: 19 of 122
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890449.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF171"
                     /isolate="INF171"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2013-09"
     gene            complement(250..633)
                     /locus_tag="JMW80_RS26915"
     CDS             complement(250..633)
                     /locus_tag="JMW80_RS26915"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_073511422.1"
                     /translation="MKFFKPEIDTIEYIRVEPSSSKTSSNINNAKSGSDTNSQPGFILR
                     SQIEEMIKKHRPKTEKEIKAESEKIIRLCSMGFIFLIVLSILALIIYFGIKDGKLPDFA
                     NNLMALMTTLVGAIGGFIYGTKR"
                     /name="hypothetical protein"
     gene            complement(630..1307)
                     /locus_tag="JMW80_RS26920"
     CDS             complement(630..1307)
                     /locus_tag="JMW80_RS26920"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_085831727.1"
                     /translation="MENKAVTISTQLAIFIDSAVARPDLLFNSLNSEIGEVIDAMPQTL
                     PLPADAPSDIPRVIGTSSFGKFNLNISLNRIDFVENYAPTEAIEKSIVEFKLKCNTLIT
                     TISQKYGIVRIGLVGNYYVPHKNPSQLITDLYLNKNKSNLDEITIRINKRDTFKNIQIN
                     NVINLSQGQVTAQDYNGNAVIVQLDYNSADNSTPLEEGVILALFKEKSIAYSSKHVEEI
                     SGL"
                     /name="hypothetical protein"
     gene            complement(1535..1648)
                     /locus_tag="JMW80_RS26925"
     CDS             complement(1535..1648)
                     /locus_tag="JMW80_RS26925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_073511420.1"
                     /translation="MHEPPVQSDCCASSGNYRLESNPKRHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            2261..2452
                     /locus_tag="JMW80_RS26930"
     CDS             2261..2452
                     /locus_tag="JMW80_RS26930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2452..2853
                     /locus_tag="JMW80_RS26935"
     CDS             2452..2853
                     /locus_tag="JMW80_RS26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_073511424.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGELSTCSGERNAKMVDTSE
                     LLRVFGPFEQSKGEHHSGQVSEQRDTASVDQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3696..3905)
                     /locus_tag="JMW80_RS26940"
     CDS             complement(3696..3905)
                     /locus_tag="JMW80_RS26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgH/BhsA/McbA-like domain containing protein"
                     /protein_id="WP_073511423.1"
                     /translation="MKSIKTFVAVTALSMMSFGAFAQSVSATASTLDRAEAKIAAQAAE
                     QGASYKITSAQFNNRVHMTAELTK"
                     /name="YdgH/BhsA/McbA-like domain containing protein"
     Typing          1999..2173
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="81.215"
                     /coverage="100.0"
                     /evalue="1.29e-29"
     Typing          complement(1536..2053)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.027"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ataggacgac catgaactga ttaaaatcga aacaatttgc ggatatcatt caaaaaaata
       61 gaacaaaaat tgagcgaata aaaaccaggc gtgagactct gattcagggg caggatgaat
      121 agccttgagg gttcgttcaa ttaagggatt atggtaaata gtgcctggca acggtcgtaa
      181 aagccccgaa gtatggggct ggggtagtgt gctgttgtga gtcgtttatt ttttgtgctt
      241 ttatcctgat tatctctttg tcccatatat aaaaccacct atcgctccaa ctaacgttgt
      301 cattagtgcc attaggttgt ttgcaaaatc tggcaacttc ccatctttta ttccaaagta
      361 aatgattaat gcaagaattg ataaaactat tagaaatata aaacccatag agcaaagcct
      421 tataattttt tcgctttcgg cctttatttc tttctctgtc ttcggcctgt gtttctttat
      481 catttcctct atttgagatc ttaagatgaa tcccggctgt gagtttgtgt cactccctga
      541 ttttgcattg tttatgttgc tacttgtttt tgaggatgat ggttctacac gaatatattc
      601 aattgtgtct atttcgggtt tgaaaaattt cataatccac ttatctcctc aacatgcttg
      661 gagctataag caatggattt ttctttgaat aaggctagga ttaccccttc ttcaagtggt
      721 gtgctgttat cggccgagtt gtagtcaagt tgaactatta ccgcatttcc attgtagtcc
      781 tgtgcagtta cttgcccttg acttaggtta ataacattgt ttatttgtat atttttgaat
      841 gtatcgcgtt tatttattct tattgttatt tcgtcaagat tgctcttgtt tttatttaaa
      901 tacagatctg ttattagttg agatgggttc ttatgtggga cataatagtt cccaaccaag
      961 ccaatcctta cgatcccata tttttgtgat attgtggtta ttaatgtgtt gcactttaat
     1021 ttgaattcta ctattgattt ttcgattgcc tcagtggggg cgtagttttc tacaaaatct
     1081 attctgttta gtgatatgtt taagttgaac ttgccaaagg aagatgtgcc aataacgcga
     1141 gggatgtctg aaggcgcatc tgctggcagg ggaagcgttt gtggcattgc gtctataact
     1201 tcgccaattt ctgagttgag gctattaaaa agaaggtctg gtctggctac ggcactatca
     1261 ataaatattg ctagctgtgt tgatattgtg acggccttgt tttccatttt acttttccta
     1321 tttttcattg gtattgattg aagtattgcg aaattaacgt gttatgagta tcttaaacga
     1381 aaaaaccgcc tttgcggggc ggttttttcg atggttcgta gagtttgcgg ctctttgaac
     1441 cgaggtaact ggctagtaga ggagctcagt caccaaaact gttcgtttag tttagcctta
     1501 accagctcat aacttcaaga ctaactcctc taaatcagtt accagtggct gctgccagtg
     1561 gtgcttttgc atgtcttttc gggttggact caagacgata gttaccggat gaggcgcagc
     1621 agtcggactg aacggggggt tcgtgcatac agtccagctt ggagcgaact gcctacccgg
     1681 aactgagtgt caggcgtgga atgagacaaa cgcggccata acagcggaat gacaccggta
     1741 aaccgaaagg caggaacagg agagcgcacg agggagctac cagggggaaa cgcctgggat
     1801 ctttatagtc ctgtcgggtt tcgccgccac tgatttgagc gtcagatttc gtgatgcttg
     1861 tcaggggggc ggagcctatg gaaaaacggc ggcgccgcat cctttttctg cccctattgt
     1921 aatgccgtat gcctttgctc ttatccgtga gcaggtaacg cccgccgcag ccgaacgtca
     1981 ggagcggaag cgaccgagtg agcgaggagg cgtcatatca ccgtaacctc cattttctcc
     2041 tgtacgccct gcagctgcat ttttcccctg ccacatgaag cactttcatt acgtgttact
     2101 cagccgtaac atattaagcc agtatacact ccgctagtgc tacgtgactg gttcagggct
     2161 gtgccccgaa acccgctaac acccctcagc tactggatat cacaccatgc catctgagta
     2221 tgatgaacaa ccggatgcga ctgatgctct gagggccctt atgacgaaac aacagaaaac
     2281 agcgctgaac atggctaaat tcatccagaa tcagtctctg ctcctgctgg agaagcttaa
     2341 cgagcttgat ctcgatgttg aggcggacct ttgtgagaaa ctccacgatg atgcggagca
     2401 tcttttccgt acactgtcct cgagactgga tgcattacag gatggtaact gatggccaga
     2461 gtgtctatta gtgaagctgc ccgactgacg ggtaagagta gaacaacact gcacaggtta
     2521 attaaagcag gtgaactgtc cacctgtagc ggtgaacgca atgcaaaaat ggtagatact
     2581 tcagagcttt tacgtgtctt tggtcccttt gagcaatcga agggtgaaca ccattctgga
     2641 caggtctctg aacagcgtga tacagcctct gttgaccaga gtgaacaggt gattcgtcat
     2701 ctgaaacagg agattgaaca cctgaacacc ttacttttgt ccaaggattc gcacattgac
     2761 agcctgaaac aggccatgct ccttcttgaa aatcaccagg caaaattaac tgaatccccg
     2821 gcgccatggt ggaaattctg gaaaaaatcc tgaccccgtc atgcttcagt tttcctcttc
     2881 ggtcatgccg gggagttcct gaaccttccc aaaaatcgtc agatctctga acgctcctca
     2941 ccactaaaaa tacccacacc ccacgcaaaa ttaaaatttt gaagataact cattaatatc
     3001 agttagttgt gggttattaa attacgcagt attactttct gtaaggtgaa tccaagtcgt
     3061 cggcgattcg tgtacgactt gccgacgact cgtcatagag tcatcgacga ctcacttaaa
     3121 actatcagta acttatgacg acttgactct agagttgaat cgtcattttg gtgttttttt
     3181 gaccttgacg actctagagt caagtcacga gtcgaatcgc cggtgaatcg tgtggtgagt
     3241 cgtccggcga cttgccataa cgtgattgcc ggccgtcgac gaacccgatt cctgaacgtg
     3301 ctgaaaacct gttttccggc tgcgccggca acgcttcacg gccacgcaat aaattgcgtc
     3361 cccgttcacc gttttcggat ggaaagaacg ccggaaacag gacttaccct ggctgaatgg
     3421 cgtgaatttt cgcgctatgc acttgcgtgc atactcatgc atgccgtaaa aacagagcct
     3481 gcgcgtttct ggcgggtttt cgggtggttt gttgtctgtt ttgccggttt cccttcagaa
     3541 acgccctgag gccgttttag cggtgcgtac aatcatgcct ttatgttaaa taacagatgc
     3601 aaaaaagccc ccgaaggggc ctgaaggttt tcctgctaag ggacgaaacg ggccgcctcc
     3661 cggcgacctg ttcggcagtt ccttctgcga ccatcttatt tggtcagttc agccgtcatg
     3721 tggacacggt tattgaactg agcgctggtg attttgtatg acgcaccttg ttcagcggcc
     3781 tgtgcggcaa tttttgcttc agcacgatcc agggtggagg cggtagcgct gacgctctga
     3841 gcaaaggcac cgaaagacat catggataga gcggtaactg caacgaaagt tttgatggat
     3901 ttcatggtcg tattccttaa gtaattttgt tctttatgtg gcgttgttgc cctgatgtga
     3961 taaatg
//
