LOCUS       NZ_LR890420             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF313 isolate INF313 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890420
VERSION     NZ_LR890420.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357177
            Assembly: GCF_904864535.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:12:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,580
            CDSs (total)                      :: 5,457
            Genes (coding)                    :: 5,304
            CDSs (with protein)               :: 5,304
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 62 of 153
            Pseudo Genes (incomplete)         :: 89 of 153
            Pseudo Genes (internal stop)      :: 29 of 153
            Pseudo Genes (multiple problems)  :: 23 of 153
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890420.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF313"
                     /isolate="INF313"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2014-02"
     gene            707..1030
                     /locus_tag="JMX61_RS27760"
     CDS             707..1030
                     /locus_tag="JMX61_RS27760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1239..>1673
                     /locus_tag="JMX61_RS28130"
                     /pseudo=""
     CDS             1239..>1673
                     /locus_tag="JMX61_RS28130"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1708..2193
                     /locus_tag="JMX61_RS27770"
     CDS             1708..2193
                     /locus_tag="JMX61_RS27770"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2197..2412
                     /locus_tag="JMX61_RS27775"
     CDS             2197..2412
                     /locus_tag="JMX61_RS27775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2580..2912
                     /locus_tag="JMX61_RS27780"
     CDS             2580..2912
                     /locus_tag="JMX61_RS27780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     ARG             2581..2912
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          420..611
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          complement(2..437)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.91"
                     /coverage="84.0"
                     /evalue="3.8000000000000003e-119"
     Typing          complement(3122..3223)
                     /name="rep_cluster_2405"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.63e-46"
     Typing          1021..2510
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gggttggact caagttgata gttaccggaa cgggcgtggt agtcggactg aacggggggt
       61 tcgtgcatac agtccatcct ggagcgaact gcctacccgg aaccgagttt caggcgtgga
      121 atgagaaacc gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaatgcgg
      181 gggagcacga gggagccacc agggggaaac gcctggtatc tttaagccgc atcgggtttc
      241 gccaccgctg atttgagcgt cattttcgtg atactcgtca ggggggcgga gcctatggaa
      301 aaacggcaac tccgcatcct tttcttggcc tttcctgctt cgagcggcat ttgcttatcc
      361 cgtaatctgt gagctggtaa cgcccgccgc agtctcacgg caggagcgta gcgaccgagt
      421 gagcgaggag gcgtcatttc atcaccacct gcattttgca cttacgcccg gcagccgcat
      481 ttttcccctg tcacatgaag cactttcata aattgccact ccgtcataac atgtttagcc
      541 agtatacact ccgctagcgc tacgtgactg gttcagggct gcgccccgaa acccgctaaa
      601 accactgccg cgcctgcggc ttgtccaaca ccgtgccgac cgggaaaaga tttcccgtcc
      661 gtcccggcgt tatcaggagg ccggattggc agacaaacgc agcaaaatgc tcaccatgtg
      721 ggtgactgag gacgagcacc ggcgtctgct ggagcgctgc gagggtaagc aactcgcggc
      781 ctggatgcgg cagacgtgcc tggacgagaa gcccgcacgc gccggcaaac ttccgtcgat
      841 ctcgccggcg ctgcttcgtc agcttgccgg catggggaac aaccttaacc agattgcccg
      901 ccaggttaac gccggtggtg gaagcggaca cgaccgcgtg cagattgtcg ccgcgctgat
      961 ggccatcgat gccggactcg agcggttgcg gcatgccgta ctggaaaagg gtgctgatga
     1021 tgatcgttaa gtttcatcct cgggggcgcg gcggcggcgg cgggccggtc gattatctgc
     1081 tgggtaaaga tcgccagcgc gacggcgcca gcgttctgca ggggaagccg gatgaagtcc
     1141 gggagcttat cgacgcctcg ccctacgcca aaaagtacac ttccggcgtt ctgtcttttg
     1201 ccgaacagga tttaccgccc ggccagcgcg aaaagctgat ggcgagtttc gagcgggttc
     1261 tgatgcccgg actcgataaa gaccagtaca gcgtgctgtg ggttgagcac cgggacaagg
     1321 ggcggctgga gctgaacttc ctgatcccga acacggagct tctgaccggc aagcggctac
     1381 agccgtatta cgaccgcgcc gaccgtccgc gcatcgatgc ctggcagacc atagtgaacg
     1441 gcaggctggg gctgcatgac ccgaacgcgc cggagaaccg gcgggtgctg gtctcgcctt
     1501 ccgcgctgcc ggaagcgaag caggaagccg cccaggcgat tacgagcggc ctgcttgccc
     1561 ttgcctcatc cggggagctg aaaacgcgtc aggacgtcac tgaggcgctg gaaagcgcag
     1621 gttttgaggt ggtgcgcacc acaaaaagca gcatcagcat tgccgacccg gacggggggc
     1681 gaaacatccg actgaaggga gccatctatg aacagtcttt taacgctggc gaaggactta
     1741 gagcagaaat cgaaagcgca gcagcagact accggcgaga tgctgaaagc cgcattcagc
     1801 gagcacgaga agtctgtcag agcggaactg agcgaaagcg agaagagaat cagcgccgcc
     1861 atcctcgacc acgaccggaa gctgtcctca gccatgagcc agcgcacgaa agggatgctg
     1921 cgcatggtca gccagacgtg gctgaccatc gttctggtct ccgcgctgct gatagcgtcg
     1981 agcgcgggca ttctgtggtg gcaggggcag cagatactcg agaactatac gaccatccgg
     2041 gagcagaaga gcacgcaggc catgctgtca gagaggaaca gcggcgtaca gctctcgacc
     2101 tgcggcgagc agagacgccg ctgcgtgagg gtgaacccgg aagcgggaca gttcggagag
     2161 gactcgagct ggatgatact ggcggggaaa tagcacatga cggagctgga aaaacagttg
     2221 ctgagcgcat tagagcagct acagcaggac tactcgaaaa ggctggacga gtgggagaac
     2281 gccttcgcgg aatggcggac gatgtctggt cttattcaac gggagaacgc ggcgctgaac
     2341 gagcgcgtca cggtcttgag caggcaggtg cagagtttga gcgagcagct gcgccggttg
     2401 tcgaaaggct gaacgcgata gaaactcacc ggcagcagga gcgggcggtg cagcaccaga
     2461 aagcgctgga gctggaacga tcgcagtggc agcatcatgg tccttcgcta tgataagccg
     2521 ggttctatta attagttgtt atgtaaagat atttaaattt ttcaacatga ggtattttta
     2581 tgaatacata tattttcctg ggaggggcta ttgtggctga agtcataggc accaccttta
     2641 tgaaatattc agaaggattt acacgcctgt ggccgtctgt aggaactgca ataagttatt
     2701 gcgctgcctt ttatctgctt tcccaaacat tggaaaatat acctaccggt attgcttacg
     2761 caatttggtc tggtgcggga attgtactaa taagcctagc tggttggttg gttagcggtc
     2821 aaaaacttga ttggcccgca attgcaggaa tgttccttat ttgcgttgga gttttggtta
     2881 ttaatatttt ttcaaaatct tctgcgcatt aactttttac cgaagcatat tggccaaagc
     2941 aaaaggattt ccttgagatc ctttctttct gcgcgtaatc tttttccctg taaacaaaaa
     3001 aaccaccgct accaacggtg gttcgtttgc cggaattcag agctaccaac tctttgttcc
     3061 gatggtaact ggctttcacg gagcgcagat acctaaactg tcctttcagt gtagccgcac
     3121 tcaggctttc acttcaagaa ctctgtaggc attctctaca atctctgctc cgtgaaccca
     3181 gttaccaatg gctaccgcca ctggcgattt gtcgtgtctt tcc
//
