LOCUS       NZ_LR890419             3514 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF313 isolate INF313 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890419
VERSION     NZ_LR890419.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357177
            Assembly: GCF_904864535.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:12:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,580
            CDSs (total)                      :: 5,457
            Genes (coding)                    :: 5,304
            CDSs (with protein)               :: 5,304
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 62 of 153
            Pseudo Genes (incomplete)         :: 89 of 153
            Pseudo Genes (internal stop)      :: 29 of 153
            Pseudo Genes (multiple problems)  :: 23 of 153
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890419.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF313"
                     /isolate="INF313"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2014-02"
     gene            complement(join(3395..3514,1..72))
                     /locus_tag="JMX61_RS27735"
     CDS             complement(join(3395..3514,1..72))
                     /locus_tag="JMX61_RS27735"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071008427.1"
                     /translation="MLKKNEIILIKSCGNSKTKIFLRGVDEGLMIDASFEDIKFAINNN
                     LHDLLGIQAETTKLKLTK"
                     /name="hypothetical protein"
     gene            1243..1584
                     /locus_tag="JMX61_RS27740"
     CDS             1243..1584
                     /locus_tag="JMX61_RS27740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1793..>2221
                     /locus_tag="JMX61_RS28125"
                     /pseudo=""
     CDS             1793..>2221
                     /locus_tag="JMX61_RS28125"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2262..2759
                     /locus_tag="JMX61_RS27750"
     CDS             2262..2759
                     /locus_tag="JMX61_RS27750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            2766..2981
                     /locus_tag="JMX61_RS27755"
     CDS             2766..2981
                     /locus_tag="JMX61_RS27755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          986..1158
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.655"
                     /coverage="100.0"
                     /evalue="9.54e-56"
     Typing          complement(515..1061)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.909"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          1575..3097
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acctcgtaaa aaaatttttg tttttgagtt accacatgat tttattaaga taatttcatt
       61 tttttttaac atgacattgt cattgtttgt tgtcgtcaga tgaatcatta tcgttgtttt
      121 tgtgtgtgtt tgttaaggct gctaagatta ttcctaacca ctgattttgt acatatcatc
      181 aaaaaaataa aaaaactaat gccctgtggt gggtatgtaa caaatcacgg ggagcgggtc
      241 agaactacgc caaaactttg aatgatcggg tggcaggcta aatgaaatct tgagattcat
      301 tcagcctcgt cgtaatctct tgctctgtaa acgaaaaaac cgccttgcag ggcggttttt
      361 cgaaggttaa gtcagttggg gaactgctta accaggtaac tggcttcagc agagcgcaga
      421 taccaaatac tgtccttcca gtgtagccgt agttaggcca ccacttcaag aactctgtag
      481 catcacctac attaactcgc tctgctaatc ctgttaccag tggctgctgc cagtggcgct
      541 ttggcgtgtc tttccgggtt ggactcaaga cgatagttac cggataaggc gcagcagtcg
      601 gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgcctt cccggaactg
      661 agtgtcaggc gtggaatgag ataaacgcgg ccataacagc ggaatgacac cggtaaaccg
      721 aaaggcagga acaggagagc gcacgaggga gctaccaggg ggaaacgcct gggatcttta
      781 tagtcctgtc gggtttcgcc gccactgatt tgagcgtcag attttgtgat gcttgtcagg
      841 ggggcggagc ctatggaaaa acggcttcgc cgcggcctca tcgcttccct gttaagtttc
      901 ttcctggtat cttcctggaa atttccgccc cgcccgtaag ccggcaccgc tcgccgcagc
      961 cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg aatatcttct gtatcgcata
     1021 ttctgcttac gctctgctgc agcatttttc ttctgccgca taaggcgctt tcctgattat
     1081 cgcactcatg ccaacatact aagccagtat acactccgct agcgctacgt gactggttca
     1141 gggctgcgcc ccgaaacccc actgacgcgc ctgcggcttg tccaaccccg cgccgaccgg
     1201 gaaaggcttt cccgtccgtc acggcgttat caggaggcga ttctggcaga taaacgcaac
     1261 aagatgctca cgatgtgggt gacggaagac gaacaccggc ggttgcttga gcggtgcgac
     1321 ggaaaacaac tggcggcgtg gatgcgccag acctgccttg atgagaaacc gacacgcgcc
     1381 ggcaggcttc cctcgatttc gcccgcgctg ctgcgtcagc ttgccggcat gggcaataac
     1441 ctgaaccaga tcgcccggaa agtgaacgcc ggtggtgccg gtcatgaccg ggtgcagatc
     1501 gtggcagcgc tgatggcgat cgatgccggt ctggaacggt tgcggcatgc cgtactggaa
     1561 aaagggccgg acgatgattg ttaaattcca tccccggggt cgcggcgggg gcgccggtcc
     1621 tgtggattat cttctgggta aagaccggca gcgtgaaggt gccagcgtcc tgcaggggaa
     1681 gccggaagaa gtccgggagc tgattgatgc gtcgccgtat gtgaaaaaat atacctccgg
     1741 ggtgctgtca ttcgcggagg cggacctgcc gccgggtcag cgtgaaaaac tgatggccag
     1801 ctttgagcgg gttctgatgc ccggactcga taaagaccag tacagcattc tgtgggtgga
     1861 acacgcagac aagggtcgtc ttgagctgaa ttttctgatc cccaataccg aattactgac
     1921 ggggaaacgc ctccagccgt attacgatcg tgccgaccgg ccgcgcatcg atgcgtggca
     1981 gacagtggtc aacggcaggc tggggctaca tgatccgaac gacccggaga accggcgggc
     2041 gctggtcacg ccttcaggac tgccagaaac gaagcaggaa gccgcagaga cgattacacg
     2101 gggtttgctg atgttagcct catcaggaga gctgaaaacg cgtgatgacg tcacaggggc
     2161 gctcacagcg gccggttttg aggtggtcag aaccacaaaa aacagtatca gcattgccga
     2221 cccggacggg gggcgaaata tccgactgag gggagccatt tatgagcagt cttttaacgg
     2281 cctcgaggga cttcgaggag aaatcgaaag cacagcagca gcttaccgaa gagaggctga
     2341 aagccgcatt cagcaagcac gagaacgttg tcaaatcgga actgaacgca agcgcgaaga
     2401 gaatcaacga cgccatcagc gcccacgaac aggggatgaa cgcggcgatg cagtcgaacc
     2461 ggctgagcgt gctgcgaatg gtcgggcgga cgtggctgac catcaccatg gtgtcagggc
     2521 tgctgttcgc cagcctgagc ggggtgctgt ggtaccaggg gaaccggata gcggcgaacc
     2581 tggcggaaat caggcagcag agagatacgc tgtcgaaact gcacatgcag acgtggggcg
     2641 tgacctatct ggagaaccgc aacggacggt ttctggtgct gccggagggg atgaaagccg
     2701 aaacgggccg gacggtggac aacaagacgc ggaacgcggt gaagctggta cgggagtaga
     2761 gcagaatgac ggaactggaa aaacaattgc tgagcgcgtt agagcagcta cagcaggact
     2821 actcgagaag gctggacgag tgggagagcg ccttcgagga atggcggaag atgtctggtc
     2881 ttatgcaacg ggagaacgcg gcgctgagcg agcgcgtgtc gggcttgagc aggcaggtgc
     2941 agagtttgag cgagcagctg cgccggttat cgacaggctg aatgagattg agcaacagcg
     3001 atacgggcaa acaacggaaa aggaaccaga gaagacagca gatctggtac cggaacggca
     3061 acgcacatta tctcatggtg acagggagta tggagactga taaacgcccg tctcaggtgg
     3121 cctgagcgtg acggggatca tggccatttt ctgcgatttc agcacacaga gagtcttttt
     3181 taaccgaaat caccggctat gcagtgatgt gaataagtga tgcatatgcg taaaataaat
     3241 caggtgcgtt tctggtggtt ttcggtgtac ttgccaccac cttttgcccg tcagccatca
     3301 gaaacgccct gagtgcctcc ggcgcggtgc gggtaagaag acgttatggt aaatcggtgg
     3361 ctttatttcg atccttcatg cttcaggggc tgtatcactt tgttagtttt agttttgtgg
     3421 tttcggcttg gattccgaga agatcgtgga ggttattgtt gatagcaaat tttatatctt
     3481 caaaacttgc atcaatcatg agtccctcat ccac
//
