LOCUS       NZ_LR890418             5783 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF313 isolate INF313 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890418
VERSION     NZ_LR890418.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357177
            Assembly: GCF_904864535.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:12:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,580
            CDSs (total)                      :: 5,457
            Genes (coding)                    :: 5,304
            CDSs (with protein)               :: 5,304
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 62 of 153
            Pseudo Genes (incomplete)         :: 89 of 153
            Pseudo Genes (internal stop)      :: 29 of 153
            Pseudo Genes (multiple problems)  :: 23 of 153
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890418.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5783
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF313"
                     /isolate="INF313"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2014-02"
     gene            join(5117..5783,1..>1274)
                     /gene="kba"
                     /locus_tag="JMX61_RS27700"
                     /pseudo=""
     CDS             join(5117..5783,1..>1274)
                     /gene="kba"
                     /locus_tag="JMX61_RS27700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010904246.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease bacteriocin klebicin B"
                     /name="kba"
     gene            1687..1950
                     /locus_tag="JMX61_RS27705"
     CDS             1687..1950
                     /locus_tag="JMX61_RS27705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015377593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_064148700.1"
                     /translation="MSNPIEDIIKNESVSDVLRYFGPGRDISKIDRMYVSYKFEVISEG
                     VLLSEYKKLFDNGELKYDSNKNVIKGPNWKEPAFVTQKKYGI"
                     /name="hypothetical protein"
     gene            2132..2389
                     /locus_tag="JMX61_RS27710"
     CDS             2132..2389
                     /locus_tag="JMX61_RS27710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015366249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="WP_010904244.1"
                     /translation="MANKTLADYTEQEFIEFIEKIKKADFATESEHDEAIYEFSQLTEH
                     PDGWDLIYHPQAGADNSPAGVVKTVKEWRAANGKPGFKKS"
                     /name="bacteriocin immunity protein"
     gene            2497..2652
                     /locus_tag="JMX61_RS27715"
     CDS             2497..2652
                     /locus_tag="JMX61_RS27715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008323621.1"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="WP_071561715.1"
                     /translation="MKKLLFLGVVTVSVVLAACQVNNVRDTGGGAVSPSSTVTGVTLDS
                     GTNGNP"
                     /name="colicin release lysis protein"
     gene            complement(2858..2972)
                     /locus_tag="JMX61_RS27720"
                     /pseudo=""
     CDS             complement(2858..2972)
                     /locus_tag="JMX61_RS27720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3388..3579
                     /locus_tag="JMX61_RS27725"
     CDS             3388..3579
                     /locus_tag="JMX61_RS27725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3579..4001
                     /locus_tag="JMX61_RS27730"
     CDS             3579..4001
                     /locus_tag="JMX61_RS27730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_064148699.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2859..3267)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aggcggaaaa taaatatcag gagctgcagc agaagattaa aggcctgaag ctgaaaaatg
       61 gtgagtatgg tacggaaaaa tgggaaataa ttggctctaa taaggagcat gatcactggg
      121 gatacaggtt ttatccatcc ggaattacca aagctcaggt tgatgtggcg cagagcgatg
      181 ctgtgaataa gcgaaatcag gctaccagtc ttgccagtca ggcaacagca gcagaacagg
      241 acagcctgaa agctacagct gcctataatg cggcagaaac gcgccgtcag gctgctcagg
      301 cggcgttaaa ttctgctgaa caggctgctg ctgctgaacg taagcggcag gaagctgagg
      361 cggctgcagc agctgctgct gagaaaaaac gtcaggcaga cgcagtagca aaagcagcag
      421 aggaagcgcg tgcggcagcg gaaaaagcca ggctgatgca ggagcgtcag gcagcagcag
      481 ataagctgaa atccacagat attcagtctg ttcgcgggat cccgtctacg gcatcgcctg
      541 cagcgtcacc catttcctgg gccgttgcat cacttggtgg tatatcgctg gatagtgtta
      601 ctgcagggaa agcctggacg cagattgctg aggtgatggc taaactgcga ggtattgccg
      661 gtgcgagtct tgttggtccc gtggtggcaa ctgctgtagg gctgttttgg tcacgtgatg
      721 ttggtattgg cagtgatgtg gtgcccggac gtgacatcag cgggctgatg ccgggtgatg
      781 cactgtcatt acctgatctg gccactttga ttaaagctgc tgacagtaaa acgggtgtca
      841 gtatgccggt tcgaggccgg attatcgtgc gtgaaggcga ttatctggag tctcagttcg
      901 ttcgaacacc tgttgccggt agtgttccgg ttgttcgggc tactctggat aaagctactg
      961 gttactgggg atatacgttg ccggcgatac agggcgtgcc cggacagaca atactggtaa
     1021 gtccgtcaga tgcgccgggc gttaatgctc ctctgggact tgctgggccg gttcctttgc
     1081 ctgaaactat tatacatacc ggtgggcaaa ctacggtccc tcaggggggg actgtgacag
     1141 tatctcctgt tattggtgaa gttgattttc gagatcttat ccttgttttc cctcctgagt
     1201 cagggttaaa gccgttatat gtgatgccag ttagccctta tggagatgca acagaaaaag
     1261 gcgagcacag cggaagacct tataatccgg ataaggcagg tggtcctgta cagaatctta
     1321 actggcgtag tgcagtcatc aacaaggccg ggattgataa ggtgaagcta cataccggtc
     1381 gctttggtga atcagcagca aacaaagtaa tgatcgaccg tctggagaaa atcctgagcg
     1441 gtcagttaca ggtaactgat acggacaagc ggttttacac ccatgaactc agagagctgg
     1501 aacgttatcg tgctttaggg gtccctgata atgtgaagcc agatgataaa ggtgttacgt
     1561 ggaataacac tcatacagca acgctggaag attataaaat taatgaaaaa actgatccgc
     1621 tctatacaaa ggatgctgaa gaggcagagt ataaagcaga gctaaaaaat aaatgagggg
     1681 gagagaatga gtaatccgat tgaagacatc attaaaaatg aatcggtaag tgatgtgctt
     1741 cgctactttg gtcctggtcg cgacatttca aaaattgacc gtatgtatgt ttcatataag
     1801 tttgaagtga tctctgaagg cgttctttta tctgaataca aaaagttatt cgacaatgga
     1861 gaactaaagt atgactctaa taaaaatgtt attaaggggc ctaactggaa agagcctgct
     1921 tttgtaacac aaaaaaaata cggcatttaa agtgtgcata tgaagccctt tgaaaagagg
     1981 gctttgatta aagctcacat atgaaaaggg tttctttttt gagtggtcgt ggtttcgatg
     2041 atactggcag catgtcaggt caacaatatc tggggtaagc tgagtgcatt aaaacctaaa
     2101 cgccatattg aaatccataa tgggaactga aatggctaat aaaactttgg ctgactatac
     2161 agagcaggaa tttattgagt ttatcgaaaa aattaaaaaa gcagactttg ctactgagtc
     2221 tgagcatgat gaggccattt atgagttcag ccagttgact gaacatccag atggttggga
     2281 tcttatttat catcctcaag caggagccga taactctcct gctggtgttg taaaaacagt
     2341 aaaagagtgg cgagcagcta acggtaagcc aggttttaaa aaatcgtgat tgaatgtgcg
     2401 ggttcaagtg atgaatccgc acatttttaa ctctggattt gaataataat tactaggtat
     2461 ccatttgctt agaataataa aaataaaagg tgatatatga aaaaattact tttcctgggg
     2521 gttgttaccg tttctgtggt tctggcggca tgtcaggtca ataatgttcg tgacaccgga
     2581 ggtggggctg tttcaccttc atcgacggtg accggagtca cgcttgatag cggtacgaac
     2641 ggcaatccgt aaaggatctt cttgagatcc catttggatc gtcgtaatct cttgctctgt
     2701 aaacgaaaaa accgccttgg cgggcggttt ttcgaaggtt ccaagagttg gcgctctttg
     2761 aaccgaggta actggcttat gaggagcaca gtaaccaaaa cttgttcttt cagtttagcc
     2821 ttaaccggcg cataacttca agactaactc ctctaaatca gttaccagtg gctgctgcca
     2881 gtggtgcttt tgcatgtctt accgggttgg actcaagatg atagttaccg gatcaaggcg
     2941 cagcagtcgg actgaacggg gggttcgtgc atacagtcca gcttggagcg aactgcctac
     3001 ccggaactga gtgtcaggcg tggaatgaga taaacgcggc cataacagcg gaatgacacc
     3061 ggtaaaccga atggcaggaa caggagagcg cacgagggag ccatcagggg gaaacgcctg
     3121 gtatctttat agtcctgtcg ggtttcgcca ccactgattt gagcgtcaaa ttctgtgatg
     3181 cttgtcaggg gggcggagcc tatggaaaaa cggccgctgt gcggcctctc cttctcccca
     3241 tcacgcgatc gctcggtttt ctcgagcttt tatacgcatg ctcctgccgc tcgccgcagc
     3301 cgaacggcag gagcgtagcg actgagtgag cgaggaagcg gaaaagagaa catccctaca
     3361 ctgagcactg acgctctgag gcctcttatg acgaaacaac agaaaacagc gctgaacatg
     3421 gctaaattca tccagaatca gtctctgctc ctgctggaga agcttaacga gcttgatctc
     3481 gatgtcgagg ccgacctttg tgagaaactc cacgatgatg cggagcatct tttccgtaca
     3541 ctgtcctcga gactggatga attacaggat ggtaactgat ggccagagtg tctattagtg
     3601 aagcggcacg gcttgttaag gttagtcgtc ctacaattta caagatgatt aacagtggga
     3661 agttaagtta cacctctgtt gtaaagcacg ggaaggctat taaagttatt gatacttctg
     3721 agcttattag agtgtttggt tctcttgatg gtgtaatcga tactgtaaaa tatgatgtaa
     3781 aaagtgacgc agaatctaca ggtattaaca gcgttggttt acatgattta caacatagaa
     3841 tcgctttact tgaagctgaa aacgatggtc ttaaaggggc tgttaaggct cgagatgagc
     3901 atattgattc ccttcgtcag gctatgcagc ttctggagca caagcacgaa ccttcttcac
     3961 caccccattc cccgtggtgg aaattctgga aaaaatcctg accccatcat gcttcagttt
     4021 tcctctccgg ccattccggg gagttcctga accttccaaa aaatcgccag atctctgaac
     4081 gctcctcacc actaaaaata cccacacact acgcaaaatt aaaattttgc agattcttta
     4141 tttaaaacaa ttggttaatg aaaaattaat gtgcagtgat gtgttacaaa gtgcagatcc
     4201 aagtcgtgga cgactctatg gcgaatcgtt tacgaattgc ccacgattca tatgtgaatc
     4261 acgctttatt atcatgttgt tatgatgaat cgactcttga ttcaattcat caatttgggc
     4321 gttttttgtt catggtgact cttgattcaa ttcacgattc gaatcgccgg tgaatcgtgt
     4381 ggtgagtcgt ccggcgactt gccataacgt gattgccggc cgtcgacgaa cccgattcct
     4441 gaacgtgctg aaaaccggtt ttccggctgc gccggcaacg cctcacggcc acgcaataaa
     4501 ttgcgtcccc gttcaccgtt ttcggatcag aagaacgccg gaaacaggac ttaccctggc
     4561 tgaatggcgt gaatttccgc gctatgcact tgcgcgcata ctcatgcatg ccgtaaaaac
     4621 agagcctgcg cgtttctggc gggttttcgg gtggtttgtt gcctgtttta ccggtttccc
     4681 gtcagaaacg ccctgaggcc gttttagcgg tgcgtacaat taagggatta tggtaaatgg
     4741 gggcgctcgg gtggcggaat accctctaca ccaagacttt ttgtacaggt ctctgtccgt
     4801 cagtcacacc ctttttaaga gcacatatcg ttaatttttt ttctctgccg agccgcgtcc
     4861 tgtctgggtt ttgtcatttc tattacgctt aacttaatga aaattcaaaa gataattgta
     4921 tctctccgcg tgttgacaga gttctcatgt caggagtagt attcaagtac tgtatataaa
     4981 cacatgtatt tatatacagt acttggtgtg gcagagaact aataacagcc tccggataca
     5041 ggttcgaagg cgataaaccg cacaccagat tctgacaagc aggaaaacga taaaaataac
     5101 aacaaaggag agagttatgg gtggtggatt taactataac ggggaaggtg ctactggcac
     5161 cggattggat cgtgatccat atgttcgcga cagcaatggt aatgctattg gtgttaaatc
     5221 aggctatcac gcggagtcct atgggacctc aagtccagcc ttagggccta atggcgctat
     5281 tcagattact gctggggtta ttgctgtgcc tggagataag ccccgacctg acggtggtag
     5341 tggtggtggg aatactgtta acaccggacc ggcaggacag ctcctggtga tgaataaagg
     5401 tcagcttgga tactgggaaa ctcgttctac gggcgcgggt aacaatgagc ataatacgag
     5461 tgtatttgtt gccgtaggtc cttctgaggc agaaaaaact gcttctgcag agaaggcgtt
     5521 aaaggaaaaa cagcaggcag aagcagcagc aaaagacttt gcggctaaaa ctgctgccgc
     5581 atcagccacg gcggaaaaag aacgccagca ggcaattgct gctgcaactg cagcgggtca
     5641 gcatcagtca gtttctgatg cccgtaatag cctgaataac gcgacgtcag atgtgtctcg
     5701 tctgaaatca gctgcagaca gtgcactgca ggaggcaaag gcaaaacgga aggctgctat
     5761 tgatgctgta cctgttgcaa ccc
//
