LOCUS       NZ_LR890398             3559 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF044 isolate INF044 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890398
VERSION     NZ_LR890398.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357013
            Assembly: GCF_904864605.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:15:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,484
            CDSs (total)                      :: 5,361
            Genes (coding)                    :: 5,249
            CDSs (with protein)               :: 5,249
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 49 of 112
            Pseudo Genes (incomplete)         :: 70 of 112
            Pseudo Genes (internal stop)      :: 13 of 112
            Pseudo Genes (multiple problems)  :: 17 of 112
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890398.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF044"
                     /isolate="INF044"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            335..559
                     /locus_tag="JMW67_RS27285"
     CDS             335..559
                     /locus_tag="JMW67_RS27285"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071653266.1"
                     /translation="MSNKDSLERKVTPRKNEPVFPMALRVGIAEDICFLELVDFPEKES
                     GRVFYSIALTKKHAKNLIDGLNKFVESGD"
                     /name="hypothetical protein"
     gene            561..1205
                     /locus_tag="JMW67_RS27290"
     CDS             561..1205
                     /locus_tag="JMW67_RS27290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044816498.1"
                     /translation="MKYINHCDSEDYYITNDSIDLGVRYDVSDYNKLELNDLRDPDLFK
                     VLGRAFVVVENSVWESWNDDVKTLDCSGDGYESILKHYESLELSGEFLLFFKKIRSAIS
                     VYNREYEFCTGDLEPSLQAIVQLIRYAPELAAKKDAQIYFDKKSECFGLIYKQTKKSKG
                     TLNLIVKTNNEIIFSFVRKVSGVVKVTGRAYIGDSLDNSIAIKSLFKMMEW"
                     /name="hypothetical protein"
     gene            1205..1681
                     /locus_tag="JMW67_RS27295"
     CDS             1205..1681
                     /locus_tag="JMW67_RS27295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_077861907.1"
                     /translation="MTVLSTLNNLKSIPCINAFTGRANNSYLWRYVMEDHKDEFGATTI
                     KCFYLREEISEDYVSIYHSNKDYYEGMVRDVHKRIPVGKTKPAIYLSFDAAEVIEQVNK
                     PDKCIDIKDEGYPHLGLWYLFDINDEFTLIEVTTTILELSSFFQRNEGGVVVPL"
                     /name="hypothetical protein"
     gene            2417..2608
                     /locus_tag="JMW67_RS27300"
     CDS             2417..2608
                     /locus_tag="JMW67_RS27300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_044816495.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSGLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2608..3030
                     /locus_tag="JMW67_RS27305"
     CDS             2608..3030
                     /locus_tag="JMW67_RS27305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_044816494.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKNTKVVD
                     TSELIRVFGSLYGGGDTVKHDVKGDAGATGVNISGLHDLQHKIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKLEPSPQVHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1889..2296)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.39"
                     /coverage="99.0"
                     /evalue="1.26e-177"
ORIGIN
        1 gaagaacgcc ggaaacagga cttaccctgg ctgaatagcg tgaattttcg cgctatgcac
       61 ttgcgtgcat actcatgcat gccgtaaaaa cagagcctgc gcgtttctgg cgggttttcg
      121 ggtggtttgt tgcctatttt accggtttcc cgtcagaaac gccctgaggc cgttttagcg
      181 gtgcgtacaa ttttggtgtt atgttaaatc atggccacaa aattccataa agtgaccaat
      241 gtaatgttaa atgagcattg tggatgaaag atgttgtttt atggtattat tttttatgtt
      301 ctaaacttaa atttatttct atcggggtat tataatgagc aataaagatt ctttagaaag
      361 aaaagtaaca ccaagaaaaa atgaacctgt attcccgatg gctctaagag ttgggatagc
      421 tgaagatatt tgttttttag agttagtgga ctttcctgaa aaagaatcag gaagggtttt
      481 ttattccata gctctaacca aaaaacatgc aaagaacctt atcgatggat tgaataaatt
      541 cgttgagtca ggtgattagt atgaaataca ttaaccactg cgatagtgaa gattattata
      601 ttactaatga tagcattgat ctcggtgttc gttatgatgt ttctgattat aataagttag
      661 agctaaatga tttaagagat ccggatttgt ttaaagtttt gggtcgagca tttgttgttg
      721 ttgagaattc tgtttgggag tcttggaatg atgatgttaa aacattagat tgctctggtg
      781 acggttatga gtcaatttta aaacattacg aatcattaga attatcaggt gaattcttat
      841 tgttttttaa aaaaataaga agtgccattt ctgtttataa tagagaatac gagttctgca
      901 ctggtgacct agaaccatct ttgcaggcta ttgttcagtt gattaggtat gcccctgaac
      961 ttgctgcaaa aaaagacgct cagatttact ttgataaaaa atcagagtgt tttgggctta
     1021 tatataaaca aactaagaaa agcaaaggca cgctaaattt aatagtgaaa acaaataacg
     1081 agattatttt ttcctttgtt agaaaagttt ctggagtggt taaggttaca ggtagggcat
     1141 atattggcga tagccttgat aactccattg ctatcaaatc attatttaaa atgatggagt
     1201 ggtgatgact gtgttatcaa ctttaaataa cctcaaatca atcccttgta ttaatgcatt
     1261 tacgggcaga gcaaataatt catatttatg gcgttatgtt atggaagatc ataaagatga
     1321 gtttggcgct acaactatta agtgttttta tcttagggag gaaatttcag aggattatgt
     1381 gtctatttat cattcaaata aagattatta tgaaggaatg gtaagggatg tacataaaag
     1441 aatccctgta gggaaaacca aacctgccat atatctctca tttgatgcag cggaagtgat
     1501 cgagcaagtt aacaaaccag ataaatgtat tgatataaag gacgaaggtt accctcactt
     1561 gggtttgtgg tatttatttg atattaatga tgaatttact ttgattgagg tgactacaac
     1621 tattttggaa ttatcctctt tttttcaaag aaatgaaggt ggcgtggttg ttcctcttta
     1681 gcgaaaaccg tcttgacgtc atcaagtgtg acctagtact cttcttgaaa aagaaaaacc
     1741 gcctttgcgg ggcggttttt cttaggttct aagagtttgc ggctctatga accaaggtaa
     1801 ctggctagtt agaggagcgc agtaaccaaa atcgttcttt cagtttagcc ttaactggca
     1861 cataacttca agactaactc ctctaaatca gttaccagtg gctgctgcca gtggcgcttc
     1921 gtcgtgtctt tccgggttgg actcaagttg atagttaccg gaaaaggcgc agcagtcgga
     1981 ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgcctacc cggaactgag
     2041 tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg aatgacaccg gtaaaccgaa
     2101 aggcaggaac aggagagcgc acgagggagc caccaggggg aaacgcctgg tatctttata
     2161 gtcctgtcgg gtttcgccac cactgatttg agcgtcagat ttcgtgatgc ttgtcagggg
     2221 ggcggagcct atggaaaaac ggccgctgtg cggcctctcc ttctccccat cacgcgatcg
     2281 ctcggttttc tcgagctttt atacgcatgc tcctgccgct cgccgcagcc gaacggcagg
     2341 agcgtagcga ctgagtgagc gaggaagcgg aaaagagaac atccctacac tgagcactga
     2401 cgctctgagg cctcttatga cgaaacaaca gaaaacagcg ctgaacatgg ctaaattcat
     2461 ccagaatcag tctctgctcc tgctggagaa gcttaacgag cttgatcttg atgtagaggc
     2521 cgacctttgt gagaaactcc acgatgatgc ggagcatctt ttccgtacac tgtcttcggg
     2581 actggatgaa ttacaggatg gaaactgatg gccagagtgt ctattagtga agcggctcgg
     2641 cttgttaagg ttagtcgccc cacaatttac aagatgatta acagtgggaa actaagttac
     2701 acctctgttg taaagcatgg gaaaaatact aaagttgttg atacatcaga gcttattagg
     2761 gtttttggct cgctttatgg tgggggcgac actgtaaaac atgatgtaaa aggtgacgca
     2821 ggcgctacag gggttaacat ctctggttta catgatttac agcataaaat tgctttgctt
     2881 gaagctgaaa acgatggtct taaaggggct gttaaagctc gtgatgaaca tatcgattct
     2941 cttcgccagg ctatgcagct tctggaacac aagctcgaac cctctccaca ggttcattct
     3001 ccgtggtgga aattctggaa gaaatcctga ccccgtcatg cttcagtttt cctctccggc
     3061 cattccgggg agttcctgaa ccttcccaaa aatcgccaga tcgctgaacg ctcctcacca
     3121 ctaaaaatat ccacacccca cgcaaaatta aaattttgca gatttgtatt ttatatcagt
     3181 agtttacgtt ctataaattt cgttttttta attttattta tacagatccg actctatgac
     3241 gactcgtcat agagtccccg gcgagtcgtc atagagtcgg taacgactca ggactataaa
     3301 aacaataagt taacaacgac ccgactctag acccgactcc ccgtttggtt gttttttaga
     3361 cgtgacgact ctgggtacga ctctagtgaa gagtcgccgg tgaatcgtgt ggtgagtcgt
     3421 ccggcgactt gccataacgt gattgccggc cgtcgacgaa cccgattcct gaacgtgctg
     3481 aaaaccggtt ttccggctgc gccggcaacg cttcacggcc acgcaataaa ttgcgtcccc
     3541 gttcaccgtt ttcggatgg
//
