LOCUS       NZ_LR890397             4411 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF044 isolate INF044 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890397
VERSION     NZ_LR890397.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357013
            Assembly: GCF_904864605.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:15:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,484
            CDSs (total)                      :: 5,361
            Genes (coding)                    :: 5,249
            CDSs (with protein)               :: 5,249
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 49 of 112
            Pseudo Genes (incomplete)         :: 70 of 112
            Pseudo Genes (internal stop)      :: 13 of 112
            Pseudo Genes (multiple problems)  :: 17 of 112
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890397.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF044"
                     /isolate="INF044"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            833..1174
                     /locus_tag="JMW67_RS27250"
     CDS             833..1174
                     /locus_tag="JMW67_RS27250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1383..>1811
                     /locus_tag="JMW67_RS27655"
                     /pseudo=""
     CDS             1383..>1811
                     /locus_tag="JMW67_RS27655"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1852..2349
                     /locus_tag="JMW67_RS27260"
     CDS             1852..2349
                     /locus_tag="JMW67_RS27260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_020325392.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLQMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            2356..2571
                     /locus_tag="JMW67_RS27265"
     CDS             2356..2571
                     /locus_tag="JMW67_RS27265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            3076..3447
                     /locus_tag="JMW67_RS27270"
     CDS             3076..3447
                     /locus_tag="JMW67_RS27270"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021314598.1"
                     /translation="MSKKNDLNLSESTLESLREYVDDFGMTVDDVVLKLINENKSLKES
                     LGQDFVLSGEKEAHHFKDYVIHKLPKGKILVTHNGLKASNMKKILIEAGRELGMDENEL
                     NPDFTTYEIGRFLFKHLHA"
                     /name="hypothetical protein"
     gene            complement(3544..3969)
                     /locus_tag="JMW67_RS27275"
     CDS             complement(3544..3969)
                     /locus_tag="JMW67_RS27275"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_046181484.1"
                     /translation="MSFQQVLNEVKVISSNGDTSLAITRYDQQGLNRFLLRDLSHQTET
                     RSNYVNNLEQLCQQAKCNRVILNVNEISESFYMKLITFCNFTLLDAKQDMQHLNGFNYF
                     IVLNSFDENSGHTVWAPSYSPNCVTERDLDEYDPDRW"
                     /name="hypothetical protein"
     gene            complement(3982..4236)
                     /locus_tag="JMW67_RS27280"
     CDS             complement(3982..4236)
                     /locus_tag="JMW67_RS27280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_101361146.1"
                     /translation="MNITINTPSVKTILDVQCDHCNFTGTIDYEAPRISKLTVGGKITF
                     DNALCPQCKTGEIFAPGGQYVRDDATGRMNRTGDANISL"
                     /name="hypothetical protein"
     Typing          564..739
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="82.32"
                     /coverage="100.0"
                     /evalue="5.910000000000001e-33"
     Typing          complement(102..618)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.962"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          1165..2687
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.606"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttgaaccga ggtaactggc ttggaggagc gcagtcacca aatctgtcct ttcagtttag
       61 ccttaaccgg cgcataactt caagactcaa ctcctctaaa tccgttacct gtggccgttg
      121 ccattggcgc tttgtatgtc tttccgggtt ggactcaaga cgatagttac cggataaggc
      181 gcagcggtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgccta
      241 cccggaactg agtgtcaggc gtggaatgag aaaaacgcgg ccataacagc ggaatgacac
      301 cggtaaaccg aaaggcagga acaggagagc gcacgaggga gctaccaggg ggaaacgcct
      361 gggatcttta tagtcctgtc gggtttcgcc accactgatt tgagcatcag attctgtgat
      421 gctcgtcagg ggggcggagc ctatggaaaa acggcagcgc cgcgtccttt tctcttcctt
      481 gccttcacgg catatgtctc tgcatttctc cgcgtgccgg ttacgcccgc cgcagccgaa
      541 cggcaggagc gtcagcgacc gagtgagcga ggaggcgtca tatctcctgc acaaccatta
      601 tctgtcttac gcccggcagc tgcatgtcat acctgccata tatagcactt tcgctgatac
      661 ccataccaat gccaacatag taagccagta tacactccgc tagcgctacg tgactggttc
      721 agggctgcgc cccgaaaccc gctaaaagcc actgacgcgc ctgcggcttg tccaaccccg
      781 cgccgaccgg gaaaggcttt cccgtccgtc acggcgttat caggaggcga ttctggcaga
      841 taaacgcaac aagatgctca cgatgtgggt gacggaagac gaacaccggc ggttgcttga
      901 gcggtgcgac ggaaaacaac tggcggcgtg gatgcgccag acctgccttg atgagaaacc
      961 gacacgcgcc ggcaggcttc cctcgatttc gcccgcgctg ctgcgtcagc ttgctggcat
     1021 gggcaataac ctgaaccaga tcgcccggaa agtgaacgcc ggtggtgccg gtcatgaccg
     1081 ggtgcagatc gtggcagcgc tgatggcgat cgatgccggt ctggaacggt tgcggcatgc
     1141 cgtactggaa aaagggccgg acgatgattg ttaaattcca tccccggggt cgcggcgggg
     1201 gcgccggtcc tgtggattat cttctgggta aagaccggca gcgtgaaggt gccagcgtcc
     1261 tgcaggggaa gccggaagaa gtccgggagc tgattgatgc gtcgccgtat gtgaaaaaat
     1321 atacctcggg ggtgctgtca ttcgcggagg cggacctgcc gccgggtcag cgtgaaaaac
     1381 tgatggccag ctttgagcgg gttctgatgc ccggactcga taaagatcag tacagcattc
     1441 tgtgggtgga acacgcagac aagggtcgtc ttgagctgaa ttttctgatc cccaataccg
     1501 aattactgac ggggaaacgc ctccagccgt attacgatcg tgccgaccgg ccgcgcatcg
     1561 atgcgtggca gacagtggtc aacggcaggc tggggctaca tgatccgaac gacccggaga
     1621 accggcgggc gctggtcacg ccgtcaggac tgccagaaac gaagcaggaa gccgcagaga
     1681 cgattacacg gggtttgctg atgttagcct catcaggaga gctgaaaacg cgtgatgacg
     1741 tcacaggggc gctcacagcg gccggttttg aggtggtcag aaccacaaaa aacagtatca
     1801 gcattgccga cccggacggg gggcgaaata tccgactgag gggagccatt tatgagcagt
     1861 cttttaacgg cctcgaggga cttcgaggag aaatcgaaag cacagcagca gcttaccgaa
     1921 gagaggctga aagccgcatt cagcaagcac gagaacgttg tcaaatcgga actgaacgca
     1981 agcgcgaaga gaatcaacga cgccatcagc gcccacgaac aggggatgaa cgcggcgatg
     2041 cagtcgaacc ggctgagcgt gctgcgaatg gtcgggcgga cgtggctgac catcaccatg
     2101 gtgtcagggc tgctgttcgc cagcctgagc ggggtgctgt ggtaccaggg gaaccggata
     2161 gcggcgaacc tggcggaaat caggcagcag agagatacgc tgtcgaaact gcagatgcag
     2221 acgtggggcg tgacctatct ggagaaccgc aacggacggt ttctggtgct gccggagggg
     2281 atgaaagccg aaacgggccg gacggtggac aacaagacgc ggaacgcggt gaagctggta
     2341 cgggagtaga gcagaatgac ggaactggaa aaacaattgc tgagcgcgtt agagcagcta
     2401 cagcaggact actcgagaag gctggacgag tgggagagcg ccttcgagga atggcggaag
     2461 atgtctggtc ttatgcaacg ggagaacgcg gcgctgagcg agcgcgtgtc gggcttgagc
     2521 aggcaggtgc agagtttgag cgagcagctg cgccggttat cgacaggctg aatgagattg
     2581 agcaacagcg atacgggcaa agaacggaaa aggaaccaga gaagacagca gatctggtac
     2641 cggaacggca acgcacatta tctcatggtg acagggagta tggagactga taaacgcccg
     2701 tctcaggtgg cctgagcgtg acggggatca tggccatttt ctgcgatttc agcacacaga
     2761 gagtcttttt taaccgaaat caccggctat gcagtgatgt gaataagtga tgcatatgcg
     2821 taaaataaat caggtgcgtt tctggtggtt ttcggtgtac ttgccaccac cttttgcccg
     2881 tcagccatca gaaacgccct gagtgcctcc ggcgcggtgc gggtaagaga tgttatggta
     2941 aatccagcgg tgtagctgtt ctttttgaac cagcgatcag tgacttctat gttgcttgtt
     3001 caatactaaa aatatgtgta ctatactact tgtgttgttt ttttcttttc tgacaactag
     3061 catagtggtg actacatgag taaaaaaaac gatttaaacc tcagtgaatc aacgttagaa
     3121 agcctcaggg agtatgtcga tgacttcggc atgactgttg atgatgttgt tctgaagtta
     3181 attaatgaga ataagtcatt gaaggaatca cttggacaag actttgtgtt atctggcgaa
     3241 aaggaagcgc accactttaa agattatgtg attcataaac tgcccaaagg aaaaattctg
     3301 gttacccata atgggcttaa ggccagcaac atgaagaaga tattgattga ggcggggagg
     3361 gagctaggca tggatgaaaa tgaactcaat ccagatttca caacctatga gatagggcgt
     3421 tttttgttta agcacctaca tgcgtaacaa tcctgcacgc ctgaagggca ggaatcgaac
     3481 ttagctgccc ggatgttatg gtaaatttag gtgctatacg gattttttat taggcgatct
     3541 gagttaccaa cgatctgggt cgtattcatc taaatcgcgc tcagttacac aattggggct
     3601 atacgatggt gcccaaactg tatgcccact gttttcatca aaagaattaa gaacaataaa
     3661 gtaattgaag ccattcaaat gttgcatatc ttgtttggcg tctaacagag tgaaattaca
     3721 aaaagttatt aatttcatat aaaacgactc tgaaatttca ttcacgttca aaataaccct
     3781 gttacatttt gcctgctggc ataattgctc aagattattt acatagttac tacgagtctc
     3841 ggtctgatga gataagtcac gtaaaagaaa acggttcaat ccttgttggt catatctggt
     3901 aatcgctagg cttgtatcac cattgcttga aataaccttt acctcattca aaacttgctg
     3961 aaaactcata tgataagttc cttatagact aatgttcgca tcgcctgtgc gattcattct
     4021 tccagtagca tcatctctaa cgtattgacc acctggagcg aaaatttcac ctgttttaca
     4081 ttgcgggcat aaagcattgt cgaaggttat ttttccgccg acagtaagct ttgaaattcg
     4141 aggggcttca taatcaatag tgccagtgaa gttacagtga tcacactgta catcaaggat
     4201 ggtttttact gacggggtat tgatagttat attcattctc aacaatcctt atcattacaa
     4261 gtggttgtga tgactttatc agagaatgct tagctaatga aaacgaagga tcttcttgag
     4321 atcgtgttcc tctcgtcgta gtcttcattc ctgtaaacga aaaaaccgcc ttgctgggcg
     4381 gttttttcga aggttcttgg agcagcaact c
//
