LOCUS       NZ_LR890387             1916 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Klebsiella pneumoniae isolate INF333 plasmid 4, complete sequence.
ACCESSION   NZ_LR890387
VERSION     NZ_LR890387.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06112228
            Assembly: GCF_904864595.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 11:19:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,329
            CDSs (total)                      :: 5,215
            Genes (coding)                    :: 5,078
            CDSs (with protein)               :: 5,078
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 58 of 137
            Pseudo Genes (incomplete)         :: 84 of 137
            Pseudo Genes (internal stop)      :: 21 of 137
            Pseudo Genes (multiple problems)  :: 23 of 137
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890387.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="INF333"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia: Melbourne"
                     /lat_lon="37.8457 S 144.9821 E"
                     /collection_date="2014"
                     /collected_by="University of Melbourne"
     gene            complement(102..338)
                     /locus_tag="JMW24_RS26480"
     CDS             complement(102..338)
                     /locus_tag="JMW24_RS26480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            1457..1759
                     /locus_tag="JMW24_RS26485"
     CDS             1457..1759
                     /locus_tag="JMW24_RS26485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     Typing          complement(504..677)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          656..1147
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 aaacgcccct gatgatttct gcgcgactgc atggctatgc acgcaggtga atggcaggtg
       61 atttcgcagc gtcagcacca ctaaaccgcc aaaagccaaa atcagcggcg cggcgcgcgc
      121 ggacgtgacc aggcaaaatc ggactgctgc cgctcatcct cacgtaatgc acgctggcgg
      181 tcggcgtaac gctgcaactc aatttgcgca cgcgctctgt tcaggacgat gtgccggtta
      241 ggctgattta gctttttacc tgacgctctt tcagctgcgg caacagcatc atcaagaaat
      301 tttttctctg caggcgtcaa gtttgtcagt ctggccataa cgttctccag tcagaataaa
      361 tcagcacagt ctgccagaca cagtagaaac gatgaagcgc cagcgacggt gaaaggcagt
      421 cagaaacggt gaacgggagc ggattttaat ccggtgccgt gaggcgttgg acaagccgca
      481 ggcgcgtcat tagcttttag cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct
      541 agcggagtgt atactggctg actatgttgg cacggatgtg gaaatcagtg aagtgcttca
      601 tgtagcagga gaaaaaaggc ggcaccagcg cgtcagcagg atatgtagta caggatatat
      661 tccgcttcct cgctcactga ctcgctgcgc tcggtcgttc ggctgcggcg agcggtgccg
      721 gcttacaggc ggggcggaaa tttcctggga gataccagga aggagcttaa cagggaagag
      781 ataaggccgc ggcgaagccg tttttccata ggctccgccc ccctgacaaa catcatgaaa
      841 tctgacgctc aaatcagtgg tggcgaaacc cgatgcggct taaagatacc aggcgtttcc
      901 ccctggtggc tccctcgtgc tcccccgcat tcctgccttt cggtttaccg gtgtcattcc
      961 gctgttatgg ccgcgtttat ctcattccac gcctgacact cagttccgcg aaggcagttc
     1021 gctcctggat ggactgtatg cacgaacccc ccgttcagtc cgactgctgc gccttatccg
     1081 gtaactatca tcttgagtcc aacccggaaa gacacgactt atcgccactg gcagcagcca
     1141 ctggtaactg atttagagga gttagtcttg aagttatgcg cctgttaagg ctaaactgaa
     1201 agaacagatt tggttactgc gctcctcgta agccagttac cacggttcaa agagttgctg
     1261 ctctgagaac cttcgaaaaa ccgccttgca gggcggtttt ttcgtttaca gagcaagaga
     1321 ttacgacgcc acagaaagga tctcaagaag atccttcacc gtaatggaaa tctatccaat
     1381 ccgagcacat aggatacaca tcgttataaa acatcggata ttatgatccc aattaaaata
     1441 agctcgagga taaaaaatga gttcaatggt ttactgccga ggatgtggca aggaaataca
     1501 cgaaacagca aagtcatgcc cgcactgcgg agccacaaac gcctcttcag gttcaggtga
     1561 aaaaagtaga atcgcagccg cgctattagc attcttcctt ggtggatttg gcgcacataa
     1621 attttactta ggaaaaatag gacaggggtt cctgtatcta attttttgct ggacattcat
     1681 acccgcgatc atcgcgttta ttgagtttat tatttatcta tgcgattccg atgaaaaatt
     1741 cgcacgaaaa tatggctaac tcatagcaaa aaaaagcccc ctaagggctt tttttgtacc
     1801 tgacggtcag accgattaaa cataacatcc cttgcccgca cccccgcagg cgccctcagc
     1861 gcaatcctgc tgcatcaggg ccgtttccag cacctttcct caccagtatc ccggaa
//
