LOCUS       NZ_LR890386             3223 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Klebsiella pneumoniae isolate INF333 plasmid 3, complete sequence.
ACCESSION   NZ_LR890386
VERSION     NZ_LR890386.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06112228
            Assembly: GCF_904864595.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 11:19:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,329
            CDSs (total)                      :: 5,215
            Genes (coding)                    :: 5,078
            CDSs (with protein)               :: 5,078
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 58 of 137
            Pseudo Genes (incomplete)         :: 84 of 137
            Pseudo Genes (internal stop)      :: 21 of 137
            Pseudo Genes (multiple problems)  :: 23 of 137
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890386.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="INF333"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia: Melbourne"
                     /lat_lon="37.8457 S 144.9821 E"
                     /collection_date="2014"
                     /collected_by="University of Melbourne"
     gene            complement(join(3007..3223,1..107))
                     /locus_tag="JMW24_RS26455"
     CDS             complement(join(3007..3223,1..107))
                     /locus_tag="JMW24_RS26455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1125..1457)
                     /locus_tag="JMW24_RS26460"
     CDS             complement(1125..1457)
                     /locus_tag="JMW24_RS26460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1625..1840)
                     /locus_tag="JMW24_RS26465"
     CDS             complement(1625..1840)
                     /locus_tag="JMW24_RS26465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1844..2329)
                     /locus_tag="JMW24_RS26470"
     CDS             complement(1844..2329)
                     /locus_tag="JMW24_RS26470"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2364..3068)
                     /locus_tag="JMW24_RS26915"
                     /pseudo=""
     CDS             complement(<2364..3068)
                     /locus_tag="JMW24_RS26915"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     ARG             complement(1126..1457)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(204..395)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          375..858
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(1528..3017)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggcttctcgt ccaggcacgt ctgccgcatc caggccgcga gttgcttacc ctcgcagcgc
       61 tccagcagac gccggtgctc gtcctcagtc acccacatgg tgagcatttt gctgcgtttg
      121 tctgccaatc cggcctcctg ataacgccgg gacggacggg aaatcttttc ccggtcggca
      181 cggtgttgga caagccgcag gcgcggcagt ggttttagcg ggtttcgggg cgcagccctg
      241 aaccagtcac gtagcgctag cggagtgtat actggctaaa catgttatga cggagtggca
      301 atttatgaaa gtgcttcatg tgacagggga aaaatgcggc tgccgggcgt aagtgcaaaa
      361 tgcaggtggt gatgaaatga cgcctcctcg ctcactcggt cgctacgctc ctgccgtgag
      421 actgcggcgg gcgttaccag ctcacagatt acgggataag caaatgccgc tcgaagcagg
      481 aaaggccaag aaaaggatgc ggagttgccg tttttccata ggctccgccc ccctgacgag
      541 tatcacgaaa atgacgctca aatcagcggt ggcgaaaccc gatgcggctt aaagatacca
      601 ggcgtttccc cctggtggct ccctcgtgct cccccgcatt cctgcctttc ggtttaccgg
      661 tgtcattccg ctgttatggc cgcggtttct cattccacgc ctgaaactcg gttccgggta
      721 ggcagttcgc tccaggatgg actgtatgca cgaacccccc gttcagtccg actaccacgc
      781 ccgttccggt aactatcaac ttgagtccaa cccggaaaga cacgacaaat cgccagtggc
      841 ggtagccatt ggtaactggg ttcacggagc agagattgta gagaatgcct acagagttct
      901 tgaagtgaaa gcctgagtgc ggctacactg aaaggacagt ttaggtatct gcgctccgtg
      961 aaagccagtt accatcggaa caaagagttg gtagctctga attccggcaa acgaaccacc
     1021 gttggtagcg gtggtttttt tgtttacagg gaaaaagatt acgcgcagaa agaaaggatc
     1081 tcaaggaaat ccttttgctt tggccaatat gcttcggtaa aaagttaatg cgcagaagat
     1141 tttgaaaaaa tattaataac caaaactcca acgcaaataa ggaacattcc tgcaattgcg
     1201 ggccaatcaa gtttttgacc gctaaccaac caaccagcta ggcttattag tacaattccc
     1261 gcaccagacc aaattgcgta agcaataccg gtaggtatat tttccaatgt ttgggaaagc
     1321 agataaaagg cagcgcaata acttattgca gttcctacag acggccacag gcgtgtaaat
     1381 ccttctgaat atttcataaa ggtggtgcct atgacttcag ccacaatagc ccctcccagg
     1441 aaaatatatg tattcataaa aatacctcat gttgaaaaat ttaaatatct ttacataaca
     1501 actaattaat agaacccggc ttatcatagc gaaggaccat gatgctgcca ctgcgatcgt
     1561 tccagctcca gcgctttctg gtgctgcacc gcccgctcct gctgccggtg agtttctatc
     1621 gcgttcagcc tttcgacaac cggcgcagct gctcgctcaa actctgcacc tgcctgctca
     1681 agaccgtgac gcgctcgttc agcgccgcgt tctcccgttg aataagacca gacatcgtcc
     1741 gccattccgc gaaggcgttc tcccactcgt ccagcctttt cgagtagtcc tgctgtagct
     1801 gctctaatgc gctcagcaac tgtttttcca gctccgtcat gtgctatttc cccgccagta
     1861 tcatccagct cgagtcctct ccgaactgtc ccgcttccgg gttcaccctc acgcagcggc
     1921 gtctctgctc gccgcaggtc gagagctgta cgccgctgtt cctctctgac agcatggcct
     1981 gcgtgctctt ctgctcccgg atggtcgtat agttctcgag tatctgctgc ccctgccacc
     2041 acagaatgcc cgcgctcgac gctatcagca gcgcggagac cagaacgatg gtcagccacg
     2101 tctggctgac catgcgcagc atccctttcg tgcgctggct catggctgag gacagcttcc
     2161 ggtcgtggtc gaggatggcg gcgctgattc tcttctcgct ttcgctcagt tccgctctga
     2221 cagacttctc gtgctcgctg aatgcggctt tcagcatctc gccggtagtc tgctgctgcg
     2281 ctttcgattt ctgctctaag tccttcgcca gcgttaaaag actgttcata gatggctccc
     2341 ttcagtcgga tgtttcgccc cccgtccggg tcggcaatgc tgatgctgct ttttgtggtg
     2401 cgcaccacct caaaacctgc gctttccagc gcctcagtga cgtcctgacg cgttttcagc
     2461 tccccggatg aggcaagggc aagcaggccg ctcgtaatcg cctgggcggc ttcctgcttc
     2521 gcttccggca gcgcggaagg cgagaccagc acccgccggt tctccggcgc gttcgggtca
     2581 tgcagcccca gcctgccgtt cactatggtc tgccaggcat cgatgcgcgg acggtcggcg
     2641 cggtcgtaat acggctgtag ccgcttgccg gtcagaagct ccgtgttcgg gatcaggaag
     2701 ttcagctcca gccgcccctt gtcccggtgc tcaacccaca gcacgctgta ctggtcttta
     2761 tcgagtccgg gcatcagaac ccgctcgaaa ctcgccatca gcttttcgcg ctggccgggc
     2821 ggtaaatcct gttcggcaaa agacagaacg ccggaagtgt actttttggc gtagggcgag
     2881 gcgtcgataa gctcccggac ttcatccggc ttcccctgca gaacgctggc gccgtcgcgc
     2941 tggcgatctt tacccagcag ataatcgacc ggcccgccgc cgccgccgcg cccccgagga
     3001 tgaaacttaa cgatcatcat cagcaccctt ttccagtacg gcatgccgca accgctcgag
     3061 tccggcatcg atggccatca gcgcggcgac aatctgcacg cggtcgtgtc cgcttccacc
     3121 accggcgtta acctggcggg caatctggtt aaggttgttc cccatgccgg caagctgacg
     3181 aagcagcgcc ggcgagatcg acggaagttt gccggcgcgt gcg
//
