LOCUS       NZ_LR890383             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF148 isolate INF148 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890383
VERSION     NZ_LR890383.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357060
            Assembly: GCF_904863355.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:06:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,311
            CDSs (total)                      :: 5,193
            Genes (coding)                    :: 5,063
            CDSs (with protein)               :: 5,063
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 53 of 130
            Pseudo Genes (incomplete)         :: 79 of 130
            Pseudo Genes (internal stop)      :: 20 of 130
            Pseudo Genes (multiple problems)  :: 20 of 130
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890383.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF148"
                     /isolate="INF148"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-08"
     gene            154..477
                     /locus_tag="JMV72_RS26440"
     CDS             154..477
                     /locus_tag="JMV72_RS26440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            686..>1120
                     /locus_tag="JMV72_RS26760"
                     /pseudo=""
     CDS             686..>1120
                     /locus_tag="JMV72_RS26760"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1155..1640
                     /locus_tag="JMV72_RS26450"
     CDS             1155..1640
                     /locus_tag="JMV72_RS26450"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            1644..1859
                     /locus_tag="JMV72_RS26455"
     CDS             1644..1859
                     /locus_tag="JMV72_RS26455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2027..2359
                     /locus_tag="JMV72_RS26460"
     CDS             2027..2359
                     /locus_tag="JMV72_RS26460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     ARG             2028..2359
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2627..3107)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          468..1957
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctagcgctac gtgactggtt cagggctgcg ccccgaaacc cgctaaaacc actgccgcgc
       61 ctgcggcttg tccaacaccg tgccgaccgg gaaaagattt cccgtccgtc ccggcgttat
      121 caggaggccg gattggcaga caaacgcagc aaaatgctca ccatgtgggt gactgaggac
      181 gagcaccggc gtctgctgga gcgctgcgag ggtaagcaac tcgcggcctg gatgcggcag
      241 acgtgcctgg acgagaagcc cgcacgcgcc ggcaaacttc cgtcgatctc gccggcgctg
      301 cttcgtcagc ttgccggcat ggggaacaac cttaaccaga ttgcccgcca ggttaacgcc
      361 ggtggtggaa gcggacacga ccgcgtgcag attgtcgccg cgctgatggc catcgatgcc
      421 ggactcgagc ggttgcggca tgccgtactg gaaaagggtg ctgatgatga tcgttaagtt
      481 tcatcctcgg gggcgcggcg gcggcggcgg gccggtcgat tatctgctgg gtaaagatcg
      541 ccagcgcgac ggcgccagcg ttctgcaggg gaagccggat gaagtccggg agcttatcga
      601 cgcctcgccc tacgccaaaa agtacacttc cggcgttctg tcttttgccg aacaggattt
      661 accgcccggc cagcgcgaaa agctgatggc gagtttcgag cgggttctga tgcccggact
      721 cgataaagac cagtacagcg tgctgtgggt tgagcaccgg gacaaggggc ggctggagct
      781 gaacttcctg atcccgaaca cggagcttct gaccggcaag cggctacagc cgtattacga
      841 ccgcgccgac cgtccgcgca tcgatgcctg gcagaccata gtgaacggca ggctggggct
      901 gcatgacccg aacgcgccgg agaaccggcg ggtgctggtc tcgccttccg cgctgccgga
      961 agcgaagcag gaagccgccc aggcgattac gagcggcctg cttgcccttg cctcatccgg
     1021 ggagctgaaa acgcgtcagg acgtcactga ggcgctggaa agcgcaggtt ttgaggtggt
     1081 gcgcaccaca aaaagcagca tcagcattgc cgacccggac ggggggcgaa acatccgact
     1141 gaagggagcc atctatgaac agtcttttaa cgctggcgaa ggacttagag cagaaatcga
     1201 aagcgcagca gcagactacc ggcgagatgc tgaaagccgc attcagcgag cacgagaagt
     1261 ctgtcagagc ggaactgagc gaaagcgaga agagaatcag cgccgccatc ctcgaccacg
     1321 accggaagct gtcctcagcc atgagccagc gcacgaaagg gatgctgcgc atggtcagcc
     1381 agacgtggct gaccatcgtt ctggtctccg cgctgctgat agcgtcgagc gcgggcattc
     1441 tgtggtggca ggggcagcag atactcgaga actatacgac catccgggag cagaagagca
     1501 cgcaggccat gctgtcagag aggaacagcg gcgtacagct ctcgacctgc ggcgagcaga
     1561 gacgccgctg cgtgagggtg aacccggaag cgggacagtt cggagaggac tcgagctgga
     1621 tgatactggc ggggaaatag cacatgacgg agctggaaaa acagttgctg agcgcattag
     1681 agcagctaca gcaggactac tcgaaaaggc tggacgagtg ggagaacgcc ttcgcggaat
     1741 ggcggacgat gtctggtctt attcaacggg agaacgcggc gctgaacgag cgcgtcacgg
     1801 tcttgagcag gcaggtgcag agtttgagcg agcagctgcg ccggttgtcg aaaggctgaa
     1861 cgcgatagaa actcaccggc agcaggagcg ggcggtgcag caccagaaag cgctggagct
     1921 ggaacgatcg cagtggcagc atcatggtcc ttcgctatga taagccgggt tctattaatt
     1981 agttgttatg taaagatatt taaatttttc aacatgaggt atttttatga atacatatat
     2041 tttcctggga ggggctattg tggctgaagt cataggcacc acctttatga aatattcaga
     2101 aggatttaca cgcctgtggc cgtctgtagg aactgcaata agttattgcg ctgcctttta
     2161 tctgctttcc caaacattgg aaaatatacc taccggtatt gcttacgcaa tttggtctgg
     2221 tgcgggaatt gtactaataa gcctagctgg ttggttggtt agcggtcaaa aacttgattg
     2281 gcccgcaatt gcaggaatgt tccttatttg cgttggagtt ttggttatta atattttttc
     2341 aaaatcttct gcgcattaac tttttaccga agcatattgg ccaaagcaaa aggatttcct
     2401 tgagatcctt tctttctgcg cgtaatcttt ttccctgtaa acaaaaaaac caccgctacc
     2461 aacggtggtt cgtttgccgg aattcagagc taccaactct ttgttccgat ggtaactggc
     2521 tttcacggag cgcagatacc taaactgtcc tttcagtgta gccgcactca ggctttcact
     2581 tcaagaactc tgtaggcatt ctctacaatc tctgctccgt gaacccagtt accaatggct
     2641 accgccactg gcgatttgtc gtgtctttcc gggttggact caagttgata gttaccggaa
     2701 cgggcgtggt agtcggactg aacggggggt tcgtgcatac agtccatcct ggagcgaact
     2761 gcctacccgg aaccgagttt caggcgtgga atgagaaacc gcggccataa cagcggaatg
     2821 acaccggtaa accgaaaggc aggaatgcgg gggagcacga gggagccacc agggggaaac
     2881 gcctggtatc tttaagccgc atcgggtttc gccaccgctg atttgagcgt cattttcgtg
     2941 atactcgtca ggggggcgga gcctatggaa aaacggcaac tccgcatcct tttcttggcc
     3001 tttcctgctt cgagcggcat ttgcttatcc cgtaatctgt gagctggtaa cgcccgccgc
     3061 agtctcacgg caggagcgta gcgaccgagt gagcgaggag gcgtcatttc atcaccacct
     3121 gcattttgca cttacgcccg gcagccgcat ttttcccctg tcacatgaag cactttcata
     3181 aattgccact ccgtcataac atgtttagcc agtatacact ccg
//
