LOCUS       NZ_LR890382             4064 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF148 isolate INF148 plasmid 2,
            complete sequence.
ACCESSION   NZ_LR890382
VERSION     NZ_LR890382.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357060
            Assembly: GCF_904863355.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:06:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,311
            CDSs (total)                      :: 5,193
            Genes (coding)                    :: 5,063
            CDSs (with protein)               :: 5,063
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 53 of 130
            Pseudo Genes (incomplete)         :: 79 of 130
            Pseudo Genes (internal stop)      :: 20 of 130
            Pseudo Genes (multiple problems)  :: 20 of 130
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890382.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF148"
                     /isolate="INF148"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="2"
                     /geo_loc_name="Australia"
                     /collection_date="2013-08"
     gene            complement(join(3799..4064,1))
                     /locus_tag="JMV72_RS26410"
     CDS             complement(join(3799..4064,1))
                     /locus_tag="JMV72_RS26410"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113519627.1"
                     /translation="MSQKKEQKTAEKPTAGPLRKHRSRAEKIDDLKKQISELRKAEREE
                     RQRARDEKLIILAKAVYEKAGKPKDIEALIDFVKSEDFKIEYK"
                     /name="hypothetical protein"
     gene            complement(134..412)
                     /gene="traD"
                     /locus_tag="JMV72_RS26415"
     CDS             complement(134..412)
                     /gene="traD"
                     /locus_tag="JMV72_RS26415"
                     /inference="COORDINATES: protein motif:HMM:NF018152.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_099745350.1"
                     /translation="MGSKKTLEQRMALAQDRLSKLKKEASQKERKAREHKKFTVGGEVT
                     RVFGLDYDLALVVGFLEHFNKLSDEQKQALKNNGERLLKSRLENADK"
                     /name="traD"
     gene            complement(402..833)
                     /locus_tag="JMV72_RS26420"
     CDS             complement(402..833)
                     /locus_tag="JMV72_RS26420"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_157769352.1"
                     /translation="MNKKQALWIGGKMNKKEIEKRLLIFTSEIDIEDIKNDFINDEVNE
                     DVFNRCLKLYYAIDDAIYNNKKSLFEALIYLINKDRENKDHDEPIITDYDLVYLTLNNY
                     INIYELKKLFLLQKNINDFDFKSMISEIEKIKREVEYGK"
                     /name="hypothetical protein"
     gene            1093..2352
                     /gene="mobQ"
                     /locus_tag="JMV72_RS26425"
     CDS             1093..2352
                     /gene="mobQ"
                     /locus_tag="JMV72_RS26425"
                     /inference="COORDINATES: protein motif:HMM:NF041496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_099745348.1"
                     /translation="MALYRLEMQNVSRSDGVSSVAKAAYRHRSVMIDERTGEIHGEKSA
                     NRDDLVYAEILAPEGTPDFLIKSSNDLWNYVEKTEKRKDARTAKEFKITLPCELTNEQN
                     IKLLKEYLTKNFVSKGIICDFVIHNDKDNKNPHAHVMITTREITLSGFGKKVRSWDEEK
                     TLHDWRKQWAKVQNQHLKNAGLKSRVSHRTLEEQKNIMIDLAKKAEDAKDFDKSILYLA
                     KAIELDRPPMQNLSRKKWRTKEGQEQRKRDQAIRDRARADARAFRLLRGVAVVDVASFV
                     VHPLEKKEQSKNNDFSEKKSWWRSTVNFIKNIKAKFSTKKDIKNDVHASDDLMTDPVTG
                     LPITKAKWQEMSDRANVRTPQPAISYQVKQSDGEGLKTAQNALQDVLDVSEGKSLKVKS
                     VPVPGSRKRRVVEEDSSDNG"
                     /name="mobQ"
     gene            2661..3518
                     /locus_tag="JMV72_RS26430"
     CDS             2661..3518
                     /locus_tag="JMV72_RS26430"
                     /inference="COORDINATES: protein motif:HMM:NF015076.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_099745352.1"
                     /translation="MILQKEYSRSDFINQIISRPFCTDDFKRDGIYRTNKRRALNSVYI
                     EHNNDSFINSIVFDIDSDTAAIAWQDADIPKPNFITQNPANGHAHLFYALSSPVCITEN
                     ARRKPQKLLKGVIEGLTERLGADPCYTGKITKNPLNPRWRTFWNEQPRFELNYLCEFID
                     TNKRVKKEVRKSIVAEGRNTALFDSLRFYAYSIIFKYQKNDDFCGFISALQEEAENIND
                     SFEDQLSFKEINHTIRSISSWVWGTFDSDTFSEIQSNRAKKAKGKTKTNTKAKKLIEFI
                     GVKK"
                     /name="replication initiation protein"
     gene            3515..3784
                     /locus_tag="JMV72_RS26435"
     CDS             3515..3784
                     /locus_tag="JMV72_RS26435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="WP_099745351.1"
                     /translation="MKGNEIRKGLTQKEMAKKFNLSLSTVKKYTSQPREHYESEAENRR
                     KTAYTLHHKKGLKWREVAEKMNTTENAVKALAKRYKQIDQENRG"
                     /name="sigma factor-like helix-turn-helix DNA-binding
                     protein"
     Typing          1184..2349
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttttttactc tcccggatga tatgtttttt aaacatatca caaagccggg ctacggtgaa
       61 gactaacgca caagccccgc cagcggcggg ttcttgcttg ttcaaccctt ccaagtgtca
      121 gattagaaat ctgtcacttg tcagcgtttt ctagacgtga ttttagcaat ctttcaccat
      181 tgttttttaa cgcttgtttt tgctcatcgc ttaacttgtt aaagtgttca agaaaaccca
      241 ctacaagagc tagatcgtaa tctaaaccaa acacccttgt aacttcaccg ccaacagtaa
      301 attttttatg ttctctagct tttctttctt tctgcgatgc ttctttttta agtttagata
      361 atctatcttg tgcaagtgcc attctttgct ctaacgtttt tttacttccc atactcaacc
      421 tctcttttaa ttttttctat ctctgaaatc atacttttaa aatcaaaatc attgatattt
      481 ttttgtaata aaaacaactt tttcagttca tagatattta tgtaattatt tagtgttaaa
      541 tacacaagat cataatcagt tataattggt tcatcatgat ctttattttc acgatcttta
      601 tttatcaaat atatcaacgc ttcaaacaat gattttttat tgttatagat tgcatcatcg
      661 atagcgtaat acagctttaa acacctatta aaaacatctt cattaacttc gtcattgatg
      721 aaatcgtttt taatatcttc aatgtcgatc tcgcttgtaa aaatcaatag ccttttttct
      781 atttcttttt tattcatttt accaccaatc cataatgctt gttttttatt caatatcgta
      841 acttttaaat attgtcaaat ttgactttaa tttaatcaga gttaatttat atatatcagt
      901 gaaagaaaag ctagtttgtt tttcattcct cttttagttt gagcgttagc gaaaaataaa
      961 agctaaggaa tgcccggtta cgcattgtaa acaatgccgg ggtctgccga cggctaaaac
     1021 ctgtttttct tacgaaaaac taaaacccaa acccaaaaga aaaaataggg gttctcatga
     1081 ggatataatt atatggcttt atatagatta gaaatgcaga acgttagtcg ttcggatggt
     1141 gtcagctcag ttgcaaaagc tgcttatcgt catcgttccg tcatgataga tgaacgaacc
     1201 ggagaaatac acggcgagaa atcagctaat cgtgacgatc tggtttatgc tgaaatattg
     1261 gcaccagaag gaacgccaga ttttttgatt aaatcaagca atgatctatg gaactatgtt
     1321 gaaaaaacag agaagagaaa ggacgcaaga acagcaaaag aatttaaaat aactttgcct
     1381 tgtgaactta ccaatgaaca aaatataaaa ctattgaaag aatacttaac aaaaaacttt
     1441 gttagtaaag gcatcatttg cgactttgtt atacataacg acaaagacaa taaaaacccg
     1501 cacgctcatg tgatgattac gacaagagaa ataacgcttt caggatttgg taaaaaagta
     1561 aggtcatggg atgaagaaaa aacccttcat gattggcgta aacaatgggc aaaagttcaa
     1621 aatcagcatt tgaaaaatgc aggcttaaaa tctcgcgtca gtcatagaac actagaagaa
     1681 caaaaaaata taatgatcga tttagctaaa aaagcagaag atgcaaaaga ttttgacaag
     1741 tctattttat atctagcaaa agctattgaa ctagatcgcc caccaatgca gaacttatca
     1801 cgtaaaaaat ggagaacaaa agaaggtcaa gaacaacgca aacgtgacca agctatcaga
     1861 gacagggcga gagccgacgc tagggctttc aggttgttga gaggtgttgc agttgttgat
     1921 gttgcttcat tcgtggttca tccgttagag aaaaaagagc agtcaaaaaa taatgacttt
     1981 tcagaaaaaa aatcttggtg gcgttctact gttaatttta taaaaaatat taaagctaag
     2041 ttctcaacta aaaaagatat taaaaacgat gtccatgcat cagacgattt aatgactgat
     2101 ccggtgacgg gtttaccaat caccaaagcg aaatggcaag agatgagtga cagggcaaac
     2161 gtaaggactc cacagcctgc gatctcatat caggttaagc aatcggacgg ggaagggcta
     2221 aaaacggctc agaatgcgtt acaggacgtt ttagacgtat cagagggtaa atcgttaaag
     2281 gtgaagtctg tgccggttcc gggttctcgt aagcgtcgag ttgtcgagga agacagcagt
     2341 gacaacggtt agctaaccag cacagccaga tcctacataa gattacaggg cttcgctcat
     2401 agcctacggc ctgtacctat caggctatag cttaacttgt gatgatttga agccttcggc
     2461 ctgtgcttcg caaaaatacc cccagaccca ttattacctg atatggctaa aatgaccact
     2521 tgacactttt ttagtggtga ctacttgaca ccatgaaagg ttatgttaga acagtaatat
     2581 aaaaacaaaa atccctgatt tccgaatgtt tggcgacagg agaaaatcag ggatctacaa
     2641 taaaaggatt gtattaaaaa atgatactac aaaaagaata tagcagaagt gattttataa
     2701 atcaaattat atcaagacca ttttgcactg acgacttcaa aagagatggt atttatagaa
     2761 caaacaaaag acgagcttta aacagcgttt atatcgagca taacaacgat agcttcatta
     2821 actctattgt gtttgatatt gacagcgata cagcggctat tgcatggcaa gatgcagata
     2881 taccgaagcc taactttata actcaaaatc cggctaatgg tcacgctcat ttattttatg
     2941 ccttatcatc tcctgtttgt ataacagaaa acgccagaag aaagccacaa aagttattaa
     3001 aaggcgttat agaaggactc accgaaagat taggtgcaga tccttgttat acgggcaaga
     3061 taacaaaaaa ccctctcaat ccgagatggc gtacattttg gaacgaacaa ccaagatttg
     3121 aattgaacta tctatgtgag ttcatagata caaataaaag agtaaaaaaa gaagtaagaa
     3181 aatcaatagt tgcagaggga aggaatacag cgttatttga tagtctgcgt ttttacgctt
     3241 acagcataat ttttaaatat caaaaaaatg atgatttctg cggtttcatt tcagcattac
     3301 aagaagaagc tgaaaacata aacgattcat tcgaagatca actaagcttt aaagaaataa
     3361 accacacaat aagaagcatt tcatcttggg tatgggggac ttttgatagt gatactttca
     3421 gcgaaataca aagcaacaga gcaaagaaag cgaaaggtaa aactaaaacc aatacaaaag
     3481 caaaaaaact tatagaattt ataggagtaa aaaaatgaaa ggcaacgaga taagaaaggg
     3541 cttaacacaa aaagagatgg ctaaaaagtt caatctttct ttaagcactg taaaaaaata
     3601 cacttctcaa ccaagagaac attatgaatc agaagcagaa aacagaagaa aaacagctta
     3661 tacgttacac cataaaaaag gcttaaaatg gcgtgaagta gctgaaaaaa tgaatacaac
     3721 agaaaatgcc gttaaagcat tagccaaaag atacaaacaa atcgaccaag aaaacagggg
     3781 ctaaaatgcc ccttagcttt atttatattc aatcttgaaa tcttcagact ttacgaaatc
     3841 aattaatgct tcaatatctt ttggttttcc tgccttttca taaacagctt ttgcaagaat
     3901 aattaatttt tcgtctcttg ctcgttgtcg ttcttctctt tctgcttttc ttagttcgct
     3961 aatctgcttt tttaaatcgt ctattttttc agctctagat ctgtgtttac gaagtggccc
     4021 tgcagttggt ttttctgctg ttttttgctc ttttttttga gaca
//
