LOCUS       NZ_LR890379             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF250 isolate INF250 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890379
VERSION     NZ_LR890379.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357225
            Assembly: GCF_904863395.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:24:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,575
            CDSs (total)                      :: 5,452
            Genes (coding)                    :: 5,303
            CDSs (with protein)               :: 5,303
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 60 of 149
            Pseudo Genes (incomplete)         :: 87 of 149
            Pseudo Genes (internal stop)      :: 29 of 149
            Pseudo Genes (multiple problems)  :: 23 of 149
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890379.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF250"
                     /isolate="INF250"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2013-12"
     gene            join(3068..3223,1..189)
                     /locus_tag="JMW58_RS27710"
     CDS             join(3068..3223,1..189)
                     /locus_tag="JMW58_RS27710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_032074402.1"
                     /translation="MADKRSKMLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPAR
                     AGKLPSISPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHA
                     VLEKGADDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            398..>832
                     /locus_tag="JMW58_RS28085"
                     /pseudo=""
     CDS             398..>832
                     /locus_tag="JMW58_RS28085"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            867..1352
                     /locus_tag="JMW58_RS27720"
     CDS             867..1352
                     /locus_tag="JMW58_RS27720"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            1356..1571
                     /locus_tag="JMW58_RS27725"
     CDS             1356..1571
                     /locus_tag="JMW58_RS27725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1739..2071
                     /locus_tag="JMW58_RS27730"
     CDS             1739..2071
                     /locus_tag="JMW58_RS27730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     ARG             1740..2071
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          2802..2993
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          complement(2339..2819)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          180..1669
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3090..3223
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.556"
                     /coverage="100.0"
                     /evalue="3.56e-22"
ORIGIN
        1 tcgccggcgc tgcttcgtca gcttgccggc atggggaaca accttaacca gattgcccgc
       61 caggttaacg ccggtggtgg aagcggacac gaccgcgtgc agattgtcgc cgcgctgatg
      121 gccatcgatg ccggactcga gcggttgcgg catgccgtac tggaaaaggg tgctgatgat
      181 gatcgttaag tttcatcctc gggggcgcgg cggcggcggc gggccggtcg attatctgct
      241 gggtaaagat cgccagcgcg acggcgccag cgttctgcag gggaagccgg atgaagtccg
      301 ggagcttatc gacgcctcgc cctacgccaa aaagtacact tccggcgttc tgtcttttgc
      361 cgaacaggat ttaccgcccg gccagcgcga aaagctgatg gcgagtttcg agcgggttct
      421 gatgcccgga ctcgataaag accagtacag cgtgctgtgg gttgagcacc gggacaaggg
      481 gcggctggag ctgaacttcc tgatcccgaa cacggagctt ctgaccggca agcggctaca
      541 gccgtattac gaccgcgccg accgtccgcg catcgatgcc tggcagacca tagtgaacgg
      601 caggctgggg ctgcatgacc cgaacgcgcc ggagaaccgg cgggtgctgg tctcgccttc
      661 cgcgctgccg gaagcgaagc aggaagccgc ccaggcgatt acgagcggcc tgcttgccct
      721 tgcctcatcc ggggagctga aaacgcgtca ggacgtcact gaggcgctgg aaagcgcagg
      781 ttttgaggtg gtgcgcacca caaaaagcag catcagcatt gccgacccgg acggggggcg
      841 aaacatccga ctgaagggag ccatctatga acagtctttt aacgctggcg aaggacttag
      901 agcagaaatc gaaagcgcag cagcagacta ccggcgagat gctgaaagcc gcattcagcg
      961 agcacgagaa gtctgtcaga gcggaactga gcgaaagcga gaagagaatc agcgccgcca
     1021 tcctcgacca cgaccggaag ctgtcctcag ccatgagcca gcgcacgaaa gggatgctgc
     1081 gcatggtcag ccagacgtgg ctgaccatcg ttctggtctc cgcgctgctg atagcgtcga
     1141 gcgcgggcat tctgtggtgg caggggcagc agatactcga gaactatacg accatccggg
     1201 agcagaagag cacgcaggcc atgctgtcag agaggaacag cggcgtacag ctctcgacct
     1261 gcggcgagca gagacgccgc tgcgtgaggg tgaacccgga agcgggacag ttcggagagg
     1321 actcgagctg gatgatactg gcggggaaat agcacatgac ggagctggaa aaacagttgc
     1381 tgagcgcatt agagcagcta cagcaggact actcgaaaag gctggacgag tgggagaacg
     1441 ccttcgcgga atggcggacg atgtctggtc ttattcaacg ggagaacgcg gcgctgaacg
     1501 agcgcgtcac ggtcttgagc aggcaggtgc agagtttgag cgagcagctg cgccggttgt
     1561 cgaaaggctg aacgcgatag aaactcaccg gcagcaggag cgggcggtgc agcaccagaa
     1621 agcgctggag ctggaacgat cgcagtggca gcatcatggt ccttcgctat gataagccgg
     1681 gttctattaa ttagttgtta tgtaaagata tttaaatttt tcaacatgag gtatttttat
     1741 gaatacatat attttcctgg gaggggctat tgtggctgaa gtcataggca ccacctttat
     1801 gaaatattca gaaggattta cacgcctgtg gccgtctgta ggaactgcaa taagttattg
     1861 cgctgccttt tatctgcttt cccaaacatt ggaaaatata cctaccggta ttgcttacgc
     1921 aatttggtct ggtgcgggaa ttgtactaat aagcctagct ggttggttgg ttagcggtca
     1981 aaaacttgat tggcccgcaa ttgcaggaat gttccttatt tgcgttggag ttttggttat
     2041 taatattttt tcaaaatctt ctgcgcatta actttttacc gaagcatatt ggccaaagca
     2101 aaaggatttc cttgagatcc tttctttctg cgcgtaatct ttttccctgt aaacaaaaaa
     2161 accaccgcta ccaacggtgg ttcgtttgcc ggaattcaga gctaccaact ctttgttccg
     2221 atggtaactg gctttcacgg agcgcagata cctaaactgt cctttcagtg tagccgcact
     2281 caggctttca cttcaagaac tctgtaggca ttctctacaa tctctgctcc gtgaacccag
     2341 ttaccaatgg ctaccgccac tggcgatttg tcgtgtcttt ccgggttgga ctcaagttga
     2401 tagttaccgg aacgggcgtg gtagtcggac tgaacggggg gttcgtgcat acagtccatc
     2461 ctggagcgaa ctgcctaccc ggaaccgagt ttcaggcgtg gaatgagaaa ccgcggccat
     2521 aacagcggaa tgacaccggt aaaccgaaag gcaggaatgc gggggagcac gagggagcca
     2581 ccagggggaa acgcctggta tctttaagcc gcatcgggtt tcgccaccgc tgatttgagc
     2641 gtcattttcg tgatactcgt caggggggcg gagcctatgg aaaaacggca actccgcatc
     2701 cttttcttgg cctttcctgc ttcgagcggc atttgcttat cccgtaatct gtgagctggt
     2761 aacgcccgcc gcagtctcac ggcaggagcg tagcgaccga gtgagcgagg aggcgtcatt
     2821 tcatcaccac ctgcattttg cacttacgcc cggcagccgc atttttcccc tgtcacatga
     2881 agcactttca taaattgcca ctccgtcata acatgtttag ccagtataca ctccgctagc
     2941 gctacgtgac tggttcaggg ctgcgccccg aaacccgcta aaaccactgc cgcgcctgcg
     3001 gcttgtccaa caccgtgccg accgggaaaa gatttcccgt ccgtcccggc gttatcagga
     3061 ggccggattg gcagacaaac gcagcaaaat gctcaccatg tgggtgactg aggacgagca
     3121 ccggcgtctg ctggagcgct gcgagggtaa gcaactcgcg gcctggatgc ggcagacgtg
     3181 cctggacgag aagcccgcac gcgccggcaa acttccgtcg atc
//
