LOCUS       NZ_LR890378             3514 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF250 isolate INF250 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890378
VERSION     NZ_LR890378.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357225
            Assembly: GCF_904863395.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:24:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,575
            CDSs (total)                      :: 5,452
            Genes (coding)                    :: 5,303
            CDSs (with protein)               :: 5,303
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 60 of 149
            Pseudo Genes (incomplete)         :: 87 of 149
            Pseudo Genes (internal stop)      :: 29 of 149
            Pseudo Genes (multiple problems)  :: 23 of 149
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890378.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF250"
                     /isolate="INF250"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2013-12"
     gene            114..305
                     /locus_tag="JMW58_RS27685"
     CDS             114..305
                     /locus_tag="JMW58_RS27685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071008427.1"
                     /translation="MLKKNEIILIKSCGNSKTKIFLRGVDEGLMIDASFEDIKFAINNN
                     LHDLLGIQAETTKLKLTK"
                     /name="hypothetical protein"
     gene            complement(719..934)
                     /locus_tag="JMW58_RS27690"
     CDS             complement(719..934)
                     /locus_tag="JMW58_RS27690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(941..1438)
                     /locus_tag="JMW58_RS27695"
     CDS             complement(941..1438)
                     /locus_tag="JMW58_RS27695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1479..1907)
                     /locus_tag="JMW58_RS28080"
                     /pseudo=""
     CDS             complement(<1479..1907)
                     /locus_tag="JMW58_RS28080"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2116..2457)
                     /locus_tag="JMW58_RS27705"
     CDS             complement(2116..2457)
                     /locus_tag="JMW58_RS27705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(2543..2715)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.655"
                     /coverage="100.0"
                     /evalue="9.54e-56"
     Typing          2640..3186
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.909"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          complement(604..2126)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2123..2436)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="9.860000000000001e-59"
ORIGIN
        1 tttttgatga tatgtacaaa atcagtggtt aggaataatc ttagcagcct taacaaacac
       61 acacaaaaac aacgataatg attcatctga cgacaacaaa caatgacaat gtcatgttaa
      121 aaaaaaatga aattatctta ataaaatcat gtggtaactc aaaaacaaaa atttttttac
      181 gaggtgtgga tgagggactc atgattgatg caagttttga agatataaaa tttgctatca
      241 acaataacct ccacgatctt ctcggaatcc aagccgaaac cacaaaacta aaactaacaa
      301 agtgatacag cccctgaagc atgaaggatc gaaataaagc caccgattta ccataacgtc
      361 ttcttacccg caccgcgccg gaggcactca gggcgtttct gatggctgac gggcaaaagg
      421 tggtggcaag tacaccgaaa accaccagaa acgcacctga tttattttac gcatatgcat
      481 cacttattca catcactgca tagccggtga tttcggttaa aaaagactct ctgtgtgctg
      541 aaatcgcaga aaatggccat gatccccgtc acgctcaggc cacctgagac gggcgtttat
      601 cagtctccat actccctgtc accatgagat aatgtgcgtt gccgttccgg taccagatct
      661 gctgtcttct ctggttcctt ttccgttgtt tgcccgtatc gctgttgctc aatctcattc
      721 agcctgtcga taaccggcgc agctgctcgc tcaaactctg cacctgcctg ctcaagcccg
      781 acacgcgctc gctcagcgcc gcgttctccc gttgcataag accagacatc ttccgccatt
      841 cctcgaaggc gctctcccac tcgtccagcc ttctcgagta gtcctgctgt agctgctcta
      901 acgcgctcag caattgtttt tccagttccg tcattctgct ctactcccgt accagcttca
      961 ccgcgttccg cgtcttgttg tccaccgtcc ggcccgtttc ggctttcatc ccctccggca
     1021 gcaccagaaa ccgtccgttg cggttctcca gataggtcac gccccacgtc tgcatgtgca
     1081 gtttcgacag cgtatctctc tgctgcctga tttccgccag gttcgccgct atccggttcc
     1141 cctggtacca cagcaccccg ctcaggctgg cgaacagcag ccctgacacc atggtgatgg
     1201 tcagccacgt ccgcccgacc attcgcagca cgctcagccg gttcgactgc atcgccgcgt
     1261 tcatcccctg ttcgtgggcg ctgatggcgt cgttgattct cttcgcgctt gcgttcagtt
     1321 ccgatttgac aacgttctcg tgcttgctga atgcggcttt cagcctctct tcggtaagct
     1381 gctgctgtgc tttcgatttc tcctcgaagt ccctcgaggc cgttaaaaga ctgctcataa
     1441 atggctcccc tcagtcggat atttcgcccc ccgtccgggt cggcaatgct gatactgttt
     1501 tttgtggttc tgaccacctc aaaaccggcc gctgtgagcg cccctgtgac gtcatcacgc
     1561 gttttcagct ctcctgatga ggctaacatc agcaaacccc gtgtaatcgt ctctgcggct
     1621 tcctgcttcg tttctggcag tcctgaaggc gtgaccagcg cccgccggtt ctccgggtcg
     1681 ttcggatcat gtagccccag cctgccgttg accactgtct gccacgcatc gatgcgcggc
     1741 cggtcggcac gatcgtaata cggctggagg cgtttccccg tcagtaattc ggtattgggg
     1801 atcagaaaat tcagctcaag acgacccttg tctgcgtgtt ccacccacag aatgctgtac
     1861 tggtctttat cgagtccggg catcagaacc cgctcaaagc tggccatcag tttttcacgc
     1921 tgacccggcg gcaggtccgc ctccgcgaat gacagcaccc cggaggtata ttttttcaca
     1981 tacggcgacg catcaatcag ctcccggact tcttccggct tcccctgcag gacgctggca
     2041 ccttcacgct gccggtcttt acccagaaga taatccacag gaccggcgcc cccgccgcga
     2101 ccccggggat ggaatttaac aatcatcgtc cggccctttt tccagtacgg catgccgcaa
     2161 ccgttccaga ccggcatcga tcgccatcag cgctgccacg atctgcaccc ggtcatgacc
     2221 ggcaccaccg gcgttcactt tccgggcgat ctggttcagg ttattgccca tgccggcaag
     2281 ctgacgcagc agcgcgggcg aaatcgaggg aagcctgccg gcgcgtgtcg gtttctcatc
     2341 aaggcaggtc tggcgcatcc acgccgccag ttgttttccg tcgcaccgct caagcaaccg
     2401 ccggtgttcg tcttccgtca cccacatcgt gagcatcttg ttgcgtttat ctgccagaat
     2461 cgcctcctga taacgccgtg acggacggga aagcctttcc cggtcggcgc ggggttggac
     2521 aagccgcagg cgcgtcagtg gggtttcggg gcgcagccct gaaccagtca cgtagcgcta
     2581 gcggagtgta tactggctta gtatgttggc atgagtgcga taatcaggaa agcgccttat
     2641 gcggcagaag aaaaatgctg cagcagagcg taagcagaat atgcgataca gaagatattc
     2701 cgcttcctcg ctcactgact cgctgcgctc ggtcgttcgg ctgcggcgag cggtgccggc
     2761 ttacgggcgg ggcggaaatt tccaggaaga taccaggaag aaacttaaca gggaagcgat
     2821 gaggccgcgg cgaagccgtt tttccatagg ctccgccccc ctgacaagca tcacaaaatc
     2881 tgacgctcaa atcagtggcg gcgaaacccg acaggactat aaagatccca ggcgtttccc
     2941 cctggtagct ccctcgtgcg ctctcctgtt cctgcctttc ggtttaccgg tgtcattccg
     3001 ctgttatggc cgcgtttatc tcattccacg cctgacactc agttccggga aggcagttcg
     3061 ctccaagctg gactgtatgc acgaaccccc cgttcagtcc gactgctgcg ccttatccgg
     3121 taactatcgt cttgagtcca acccggaaag acacgccaaa gcgccactgg cagcagccac
     3181 tggtaacagg attagcagag cgagttaatg taggtgatgc tacagagttc ttgaagtggt
     3241 ggcctaacta cggctacact ggaaggacag tatttggtat ctgcgctctg ctgaagccag
     3301 ttacctggtt aagcagttcc ccaactgact taaccttcga aaaaccgccc tgcaaggcgg
     3361 ttttttcgtt tacagagcaa gagattacga cgaggctgaa tgaatctcaa gatttcattt
     3421 agcctgccac ccgatcattc aaagttttgg cgtagttctg acccgctccc cgtgatttgt
     3481 tacataccca ccacagggca ttagtttttt tatt
//
