LOCUS       NZ_LR890372             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF354 isolate INF354 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890372
VERSION     NZ_LR890372.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357254
            Assembly: GCF_904863325.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:15:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,559
            CDSs (total)                      :: 5,436
            Genes (coding)                    :: 5,291
            CDSs (with protein)               :: 5,291
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 60 of 145
            Pseudo Genes (incomplete)         :: 82 of 145
            Pseudo Genes (internal stop)      :: 29 of 145
            Pseudo Genes (multiple problems)  :: 22 of 145
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890372.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF354"
                     /isolate="INF354"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            join(3141..3223,1..133)
                     /locus_tag="JMW41_RS27925"
     CDS             join(3141..3223,1..133)
                     /locus_tag="JMW41_RS27925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            301..633
                     /locus_tag="JMW41_RS27650"
     CDS             301..633
                     /locus_tag="JMW41_RS27650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            1651..1974
                     /locus_tag="JMW41_RS27655"
     CDS             1651..1974
                     /locus_tag="JMW41_RS27655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2183..>2617
                     /locus_tag="JMW41_RS28020"
                     /pseudo=""
     CDS             2183..>2617
                     /locus_tag="JMW41_RS28020"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2652..3137
                     /locus_tag="JMW41_RS27935"
     CDS             2652..3137
                     /locus_tag="JMW41_RS27935"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     ARG             302..633
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          1364..1555
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          complement(901..1381)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          1965..3223
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.571"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgccttcgcg gaatggcgga cgatgtctgg tcttattcaa cgggagaacg cggcgctgaa
       61 cgagcgcgtc acggtcttga gcaggcaggt gcagagtttg agcgagcagc tgcgccggtt
      121 gtcgaaaggc tgaacgcgat agaaactcac cggcagcagg agcgggcggt gcagcaccag
      181 aaagcgctgg agctggaacg atcgcagtgg cagcatcatg gtccttcgct atgataagcc
      241 gggttctatt aattagttgt tatgtaaaga tatttaaatt tttcaacatg aggtattttt
      301 atgaatacat atattttcct gggaggggct attgtggctg aagtcatagg caccaccttt
      361 atgaaatatt cagaaggatt tacacgcctg tggccgtctg taggaactgc aataagttat
      421 tgcgctgcct tttatctgct ttcccaaaca ttggaaaata tacctaccgg tattgcttac
      481 gcaatttggt ctggtgcggg aattgtacta ataagcctag ctggttggtt ggttagcggt
      541 caaaaacttg attggcccgc aattgcagga atgttcctta tttgcgttgg agttttggtt
      601 attaatattt tttcaaaatc ttctgcgcat taacttttta ccgaagcata ttggccaaag
      661 caaaaggatt tccttgagat cctttctttc tgcgcgtaat ctttttccct gtaaacaaaa
      721 aaaccaccgc taccaacggt ggttcgtttg ccggaattca gagctaccaa ctctttgttc
      781 cgatggtaac tggctttcac ggagcgcaga tacctaaact gtcctttcag tgtagccgca
      841 ctcaggcttt cacttcaaga actctgtagg cattctctac aatctctgct ccgtgaaccc
      901 agttaccaat ggctaccgcc actggcgatt tgtcgtgtct ttccgggttg gactcaagtt
      961 gatagttacc ggaacgggcg tggtagtcgg actgaacggg gggttcgtgc atacagtcca
     1021 tcctggagcg aactgcctac ccggaaccga gtttcaggcg tggaatgaga aaccgcggcc
     1081 ataacagcgg aatgacaccg gtaaaccgaa aggcaggaat gcgggggagc acgagggagc
     1141 caccaggggg aaacgcctgg tatctttaag ccgcatcggg tttcgccacc gctgatttga
     1201 gcgtcatttt cgtgatactc gtcagggggg cggagcctat ggaaaaacgg caactccgca
     1261 tccttttctt ggcctttcct gcttcgagcg gcatttgctt atcccgtaat ctgtgagctg
     1321 gtaacgcccg ccgcagtctc acggcaggag cgtagcgacc gagtgagcga ggaggcgtca
     1381 tttcatcacc acctgcattt tgcacttacg cccggcagcc gcatttttcc cctgtcacat
     1441 gaagcacttt cataaattgc cactccgtca taacatgttt agccagtata cactccgcta
     1501 gcgctacgtg actggttcag ggctgcgccc cgaaacccgc taaaaccact gccgcgcctg
     1561 cggcttgtcc aacaccgtgc cgaccgggaa aagatttccc gtccgtcccg gcgttatcag
     1621 gaggccggat tggcagacaa acgcagcaaa atgctcacca tgtgggtgac tgaggacgag
     1681 caccggcgtc tgctggagcg ctgcgagggt aagcaactcg cggcctggat gcggcagacg
     1741 tgcctggacg agaagcccgc acgcgccggc aaacttccgt cgatctcgcc ggcgctgctt
     1801 cgtcagcttg ccggcatggg gaacaacctt aaccagattg cccgccaggt taacgccggt
     1861 ggtggaagcg gacacgaccg cgtgcagatt gtcgccgcgc tgatggccat cgatgccgga
     1921 ctcgagcggt tgcggcatgc cgtactggaa aagggtgctg atgatgatcg ttaagtttca
     1981 tcctcggggg cgcggcggcg gcggcgggcc ggtcgattat ctgctgggta aagatcgcca
     2041 gcgcgacggc gccagcgttc tgcaggggaa gccggatgaa gtccgggagc ttatcgacgc
     2101 ctcgccctac gccaaaaagt acacttccgg cgttctgtct tttgccgaac aggatttacc
     2161 gcccggccag cgcgaaaagc tgatggcgag tttcgagcgg gttctgatgc ccggactcga
     2221 taaagaccag tacagcgtgc tgtgggttga gcaccgggac aaggggcggc tggagctgaa
     2281 cttcctgatc ccgaacacgg agcttctgac cggcaagcgg ctacagccgt attacgaccg
     2341 cgccgaccgt ccgcgcatcg atgcctggca gaccatagtg aacggcaggc tggggctgca
     2401 tgacccgaac gcgccggaga accggcgggt gctggtctcg ccttccgcgc tgccggaagc
     2461 gaagcaggaa gccgcccagg cgattacgag cggcctgctt gcccttgcct catccgggga
     2521 gctgaaaacg cgtcaggacg tcactgaggc gctggaaagc gcaggttttg aggtggtgcg
     2581 caccacaaaa agcagcatca gcattgccga cccggacggg gggcgaaaca tccgactgaa
     2641 gggagccatc tatgaacagt cttttaacgc tggcgaagga cttagagcag aaatcgaaag
     2701 cgcagcagca gactaccggc gagatgctga aagccgcatt cagcgagcac gagaagtctg
     2761 tcagagcgga actgagcgaa agcgagaaga gaatcagcgc cgccatcctc gaccacgacc
     2821 ggaagctgtc ctcagccatg agccagcgca cgaaagggat gctgcgcatg gtcagccaga
     2881 cgtggctgac catcgttctg gtctccgcgc tgctgatagc gtcgagcgcg ggcattctgt
     2941 ggtggcaggg gcagcagata ctcgagaact atacgaccat ccgggagcag aagagcacgc
     3001 aggccatgct gtcagagagg aacagcggcg tacagctctc gacctgcggc gagcagagac
     3061 gccgctgcgt gagggtgaac ccggaagcgg gacagttcgg agaggactcg agctggatga
     3121 tactggcggg gaaatagcac atgacggagc tggaaaaaca gttgctgagc gcattagagc
     3181 agctacagca ggactactcg aaaaggctgg acgagtggga gaa
//
