LOCUS       NZ_LR890368             2496 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF049 isolate INF049 plasmid 9,
            complete sequence.
ACCESSION   NZ_LR890368
VERSION     NZ_LR890368.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357023
            Assembly: GCF_904863365.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:43:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,553
            CDSs (total)                      :: 5,425
            Genes (coding)                    :: 5,294
            CDSs (with protein)               :: 5,294
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 61 of 131
            Pseudo Genes (incomplete)         :: 69 of 131
            Pseudo Genes (internal stop)      :: 26 of 131
            Pseudo Genes (multiple problems)  :: 20 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890368.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF049"
                     /isolate="INF049"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="9"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            complement(278..505)
                     /locus_tag="JMW75_RS27700"
     CDS             complement(278..505)
                     /locus_tag="JMW75_RS27700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1707..1925
                     /locus_tag="JMW75_RS27705"
     CDS             1707..1925
                     /locus_tag="JMW75_RS27705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_182407767.1"
                     /translation="MFGFSSGALMTFNDDERHLLVSVVSGWLRRAEGDAGAMMLDAYRQ
                     ILSETEPAARAVMLEFLESVRIHYVSS"
                     /name="hypothetical protein"
     gene            complement(2223..2408)
                     /locus_tag="JMW75_RS27710"
     CDS             complement(2223..2408)
                     /locus_tag="JMW75_RS27710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032673404.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEKDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1428..1597
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.698"
                     /coverage="98.0"
                     /evalue="2.0600000000000002e-57"
     Typing          2089..2176
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="1.5000000000000001e-30"
     Typing          complement(921..1503)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.331"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 acaggcgcgt ttctgacggg ttccggggtg gtttgttgtg gtttttgtca tggttccgtc
       61 agaaacgcgc tgagcgcgtc tgaggcggtg cgggcaacgg atgttatggt aaattcttgg
      121 gggcttgatt ataaaatacc gcacttcctc ttatgtcttg tgctttttag acaaccctga
      181 aagcttttag ctttggtgat gcaatttgct gggattttgg cggagaacca caggtaaaga
      241 aaaaggccac attagcggcc tttttcggag aatatgctca gtgcggaatt tcggagactt
      301 ctttaacgtc ggttttattg atctgctgtt tgacaccatt cgcgtctgta tagccaagca
      361 ggcctgagtc tgattcttta ggtttgccgt cgctgacaat agtgcgaccg tcattggtgt
      421 gtatggcata gcttgtgcgc gtgcagccgg tgagggctga aagcgcaact gccgctgcga
      481 acactgaaac aaaaatcttt ttcaaagcca gctcctttta tccatatcag ttttggtcac
      541 taaccatcta actataggtt attttttatg tgaaaagagg cttgatggtg ggctgtatat
      601 cgagttaggc gcgaggtgct atggtcaaag tgtggtgtca agcggggagg aggcttatat
      661 gagatgtaat ccagcagata catataccaa gatgatttaa gtattcctct ttgtgaggtt
      721 ggatgtctaa tttataaagg atcttcttga gatccttttt tttcgcgcgt aatctcttgc
      781 cctgtaaacg aaaaaaccac cctggcaggt ggtttttcga aggttaggta atcctggcag
      841 atcccctaac cgtggtaaca gtcttgtgcg agacatgtca ccaaatttgt cctttcagtg
      901 tagcctcact aaggccgcca cttcaagaac tcttgataca tctctcgcac atcctgttta
      961 ccaatggccg ttgccaatgg cgattagtcg tgtctttccg ggttggactc aagttgatag
     1021 ttaccggata aggcgcagcg gtcggactga acggggggtt cgtgcataca gtccatcctg
     1081 gagcgaactg ccttcccgga actgagtgtc aggcgtggaa tgagaaaccg cggccataac
     1141 agcggagtga caccggtaaa ccgaaaggca ggaatgcggg ggagcacgag ggagccacca
     1201 gggggaaacg cctggtatct ttaagccgca tcgggtttcg ccaccactga tttgagcgtc
     1261 agatttcgtg atgcttgtca ggggggcgga gcctatggaa aaacggcttt gccgtggcct
     1321 tatgcctttt tcgctaagaa ccttcctggc attctccagg aaatttctgc tctgtacgta
     1381 agcccgtacc gctcgccgca gccgaacgac cgagcgcagc gagtcagtga gcgaggaagc
     1441 ggaatatctc ctgtatcaca tattctgctg acgcaccgat gccgcctttt tctcctgcca
     1501 catgaagcac ttaactgaca tccgcatccg tgccaacata ttaagccagt atacactccg
     1561 ctagcgctgc gtgactggtc cggcgctgcg cccggaaccc gcctgtaccg gttaagcagc
     1621 cgttctggtc tgactgcgat ttttttcatt cctgcccgct accctgtaaa cctttcttct
     1681 gcgttgccgt taacaggagg taagccatgt ttggtttttc ctccggagcc ctgatgactt
     1741 ttaatgatga tgagcgacac ctgcttgtgt ccgttgtttc gggctggctc cggcgtgccg
     1801 aaggggatgc cggagccatg atgctggatg cataccggca gattttgtct gaaaccgaac
     1861 cggccgcaag ggcggtcatg ctcgaatttc ttgaatcagt tcgcattcat tacgtttcgt
     1921 cctgagcatt tcctgaagca tttcctgaat ttttgtccat actcaatcca ggcggccgtc
     1981 acggacggtg gtcgtcgttc catgatgctg ttatggaaga ttgagagtaa tctaacttga
     2041 ttgagttccg ggcgtgtcgc ccggtttttt ttgctgtttc ccggtgtccg ctcccggaca
     2101 ggatgtgcat ttgtaatacc gcgcacgcgg cggcatcaca aataccccgt tcagggctgc
     2161 gccccgacac cccgccatcg cctcacggcc gcgcactgaa ttgcgcaccc gttcaccgat
     2221 tttcacgcat ctttctcgcc tatctgtgcg ttcagcatgg cgtaaagcgc ttcagcctga
     2281 tcgtgcagat gctcacagca gccggctgcc tcatccagat ccatctgttc gagccgttcg
     2341 aggaggagga gtgtctgtga gcggataaat ttggccatgt tgagggcggc ggattcctgt
     2401 ctggtcactg gtgattttcc ccgtctggtg atgatttttg cgtgaaaaga gcatgccgtc
     2461 attctggtgc atagtcatgc atgccgttaa aattta
//
