LOCUS       NZ_LR890366             3549 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF049 isolate INF049 plasmid 7,
            complete sequence.
ACCESSION   NZ_LR890366
VERSION     NZ_LR890366.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357023
            Assembly: GCF_904863365.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:43:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,553
            CDSs (total)                      :: 5,425
            Genes (coding)                    :: 5,294
            CDSs (with protein)               :: 5,294
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 61 of 131
            Pseudo Genes (incomplete)         :: 69 of 131
            Pseudo Genes (internal stop)      :: 26 of 131
            Pseudo Genes (multiple problems)  :: 20 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890366.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3549
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF049"
                     /isolate="INF049"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="7"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            564..755
                     /locus_tag="JMW75_RS27650"
     CDS             564..755
                     /locus_tag="JMW75_RS27650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            755..1177
                     /locus_tag="JMW75_RS27655"
     CDS             755..1177
                     /locus_tag="JMW75_RS27655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_025714834.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTSINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKREPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1925..>2266)
                     /locus_tag="JMW75_RS27660"
                     /pseudo=""
     CDS             complement(1925..>2266)
                     /locus_tag="JMW75_RS27660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178052.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            <2265..2867
                     /locus_tag="JMW75_RS27665"
                     /pseudo=""
     CDS             <2265..2867
                     /locus_tag="JMW75_RS27665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178051.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="klebicin B-related nuclease bacteriocin"
                     /name="klebicin B-related nuclease bacteriocin"
     gene            2869..3126
                     /locus_tag="JMW75_RS27670"
     CDS             2869..3126
                     /locus_tag="JMW75_RS27670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="WP_025714833.1"
                     /translation="MAGNKISDFTEEEFTAFVSKIIAADFPTDKENDDAIYSFAQLTEH
                     PAGWNLIFKPKVGEDSSAKGIVKTVKEWRAANGKPGFKKA"
                     /name="bacteriocin immunity protein"
     gene            3234..3389
                     /locus_tag="JMW75_RS27675"
     CDS             3234..3389
                     /locus_tag="JMW75_RS27675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008323621.1"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="WP_071561715.1"
                     /translation="MKKLLFLGVVTVSVVLAACQVNNVRDTGGGAVSPSSTVTGVTLDS
                     GTNGNP"
                     /name="colicin release lysis protein"
     Typing          complement(47..516)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.834"
                     /coverage="92.0"
                     /evalue="2.73e-170"
ORIGIN
        1 gtttagcctt aacaggcgca tgacttcaag accaactcct ctaaatccgt taccagtggc
       61 tgctgccagt ggcgctttgt cgtgtctttc cgggttggac tcaagatgat agttaccgga
      121 taagacgcag cagtcggact gaacgggggg ttcgtgcata cagtccagct tggagcgaac
      181 tgcctacccg gaactgagtg tcaggcgtgg aatgagacaa acgcggccat aacagcggaa
      241 tgacaccggt aaaccgaatg gcaggaacag gagagcgcac gagggagcca tcagggggaa
      301 acgcctggta tctttatagt cctgtcgggt ttcgccacca ctgatttgag cgtcaaattc
      361 tgtgatgctt gtcagggggg cggagcctat ggaaaaacgg ccgctgtgct gccttctccc
      421 tctccgagct gtctgctcta tgtcgttatg tgcgcgttgc gaccgctcgc cgcagccgaa
      481 cggcaggagc gtagcgactg agtgagcgag gaagcggaaa agagatctgt ctgacattga
      541 gcactgacgc tctgaggccc tttatgacga aacaacagaa aacagcgctg aacatggcta
      601 aattcatcca gaatcagtct ctgctcctgc tggagaagct taacgagctt gatctcgatg
      661 ttgaggccga cctttgtgag aaactccacg atgatgcgga gcatcttttc cgtacactgt
      721 cctcgagact ggatgaatta caggatggca attgatggcc agagtgtcta ttagtgaagc
      781 ggcacggctt gttaaggtta gccgtcccac aatttacaag atgattaaca gtgggaagtt
      841 aagttacacc tctgttgtaa agcacgggaa ggctattaaa gttattgata cttcagagct
      901 tattagagtt tttggttctc ttgatggtgt catcgatact gtaaaatatg atgtaaaaag
      961 tgacgcagaa tctacaagta ttaacagcgt tggtttacat gatttacaac atagaatcgc
     1021 tctacttgaa gctgaaaacg atggtcttaa aggggctgtt aaggctcgag atgagcatat
     1081 tgattccctt cgtcaggcta tgcagcttct ggagcacaag cgcgagcctt cttcaccacc
     1141 ccattccccg tggtggaaat tctggaaaaa atcctgatcc tgccatgctt gagttttcct
     1201 ctccggccat cccagggagt tcctgaacct tcccaaaaat cgccagatct ctgaacgctc
     1261 ctcacgacta aaaataccca cacactacgc aaaattaaaa ttttgcagat tccttattta
     1321 aaacaattgg ttaatgaaaa attaatgtgc agtgatgtgt tacaaagtgc agatccaagt
     1381 cgtggacgac tctatggcga atcgtttacg aattgcccac gattcatatg tgaatcacgc
     1441 tttattatca tgttgttatg atgaatcgac tcttgattca attcatcaat ttgggcgttt
     1501 tttgttcatg gtgactcttg attcaattca cgattcgaat cgccggtgaa tcgtgtggtg
     1561 agtcgtccgg cgacttgcca taacgtgatt gccggccgtc gacgaacccg attcctgaac
     1621 gtgctgaaaa ccggttttcc ggctgcgccg gcaacgcctc acggccacgc aataaattgc
     1681 gtccccgttc accgttttcg gatcagaaga acgccggaaa caggacttac cctggctgaa
     1741 tggcgtgaat ttccgcgcta tgcacttgcg cgcatactca tgcatgccgt aaaaacagag
     1801 cctgcgcgtt tctggcgggt tttcgggtgg tttgttgcct gttttaccgg tttcccgtca
     1861 gaaacgtcct gaggccgttt tagcggtgcg tacaattaag ggattatggt aaatggtgac
     1921 ttggttaatc ataaacatcc tgggggatgg catacaccag ttggatatcc ggtgcatcgt
     1981 tgagccatcg acctgatttt ttcattaagt agccaccaat ttcttcggta gtcagccggg
     2041 catgaaacaa tgcttcatca ttgaaccagc agtcagggtg atagatgaga tccagtgggt
     2101 ttgccttgaa attaatctcc agtaactgga gtgcatagct gtggtcagat gcactacctt
     2161 ctgctttgcg tatgaagttg ataacgtcgt tcagttcttt ccatgtaaag tcatcgaggt
     2221 atttttcctg attaagcgcc atcctggtga aatctagtgc acttgacgca cctggtgcaa
     2281 acggaccact gacgctaagc gggccggtac cactaccgga gcgtattctg cataccggtg
     2341 atcagatttc ggcgccacag gctacagata aaaccgtgac gccggtagcg gatgacctcg
     2401 attttgacga tattattctg gtgtttcctc cggaatccgg cctaaaaccg ctgtatgtga
     2461 tgtaccgtag ccctcgtaac atgcccggta cagtgagcgg caaagggcag aacgttggca
     2521 ataactggat ggggggggcc agtaccgggg atggtgctcc tgttccttcc cagattgcgg
     2581 ataaattacg cgggaagact ttcggtagtt ttgattcttt ccgtcgggcg ttctggaaag
     2641 cggttgctga cgattctgca ctgagcaagc aatttagtga agctgatatt aatcagatga
     2701 aagctggaag ggcacctact gcggactttt tagaatcagt agggaaacgt gttaaaattg
     2761 aattacacca cgaaaaagaa atatctcaag gaggggctgt tatggatgtc gataacatta
     2821 aggcgctaac acctaaaaat catattgaga cacataaagg aaaataaaat ggctggtaat
     2881 aaaatttcag attttacgga agaagaattt actgcttttg ttagtaaaat aatcgctgct
     2941 gattttccaa ctgacaaaga gaacgatgat gctatttatt cgttcgccca actaacagag
     3001 catcctgctg gttggaacct catcttcaag cctaaggtag gcgaagattc ttcggcgaaa
     3061 ggaattgtta aaaccgtaaa ggaatggcga gctgctaacg gtaagccagg ttttaaaaaa
     3121 gcgtgattga atttgcgggt tcaagttatg agcccgctca tttgtaactc tggatttgaa
     3181 gaataattac tagatatcca tttgcctaga ataataaaaa taaaaggtga tatatgaaaa
     3241 aattactttt cctaggggtt gttaccgttt ctgtggttct ggcagcatgt caggtcaata
     3301 atgttcgaga caccggaggt ggggctgttt caccttcatc gacggtgacc ggagtcacgc
     3361 ttgatagcgg tacgaacggc aatccgtaaa ggatcttctt gagatcccat ttggatcgtc
     3421 gtaatctctt gctctgtaaa cgaaaaaacc gccttgcagg gcggtttttc cgaaggttca
     3481 aacacttgca ggtgattgaa ccaaggtaac tggcttagag gagcgcagtc accaaaaatt
     3541 gttctttca
//
