LOCUS       NZ_LR890365             3888 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF049 isolate INF049 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890365
VERSION     NZ_LR890365.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357023
            Assembly: GCF_904863365.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:43:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,553
            CDSs (total)                      :: 5,425
            Genes (coding)                    :: 5,294
            CDSs (with protein)               :: 5,294
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 61 of 131
            Pseudo Genes (incomplete)         :: 69 of 131
            Pseudo Genes (internal stop)      :: 26 of 131
            Pseudo Genes (multiple problems)  :: 20 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890365.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3888
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF049"
                     /isolate="INF049"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            809..1705
                     /locus_tag="JMW75_RS27630"
     CDS             809..1705
                     /locus_tag="JMW75_RS27630"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159381223.1"
                     /translation="MKIHLAFVVFSGFLISGCDGDKDINKVKSYVFSDIDNSRDLGTVM
                     SHRDACKSGEWHSEVDRSGRKIVTYSCVLDHEMINNMLSAELERTRNDQILKYSKEIEQ
                     LDRYDSIVKDAYGAALSNLAAIQSEYDELKNPDGSISPELRSKIDLMKSADSESLMERR
                     AGLPYDADDAVASLSSVFEYVDLYSGQDIEKAKGILSNSYNDYIKKSSSERDRNIGIIN
                     KAKGSGVSFGLKSAGSDIYFSSNPSSEQPVSFVGMKYTFNNNGRETSTTNGSLVYVYNG
                     REMSYIKAFATAYLINR"
                     /name="hypothetical protein"
     gene            complement(1935..2048)
                     /locus_tag="JMW75_RS27635"
     CDS             complement(1935..2048)
                     /locus_tag="JMW75_RS27635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_155006912.1"
                     /translation="MHEPPVQSDYHACSGNYQLESNPERHDKAPLAVAIGN"
                     /name="replication initiation protein"
     gene            3246..3437
                     /locus_tag="JMW75_RS27640"
     CDS             3246..3437
                     /locus_tag="JMW75_RS27640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3437..3859
                     /locus_tag="JMW75_RS27645"
     CDS             3437..3859
                     /locus_tag="JMW75_RS27645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032421724.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGVNSVDLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPDSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          2410..2582
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.678"
                     /coverage="100.0"
                     /evalue="2.02e-67"
     Typing          complement(1940..2485)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.182"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 ccatcccggg gagttcctga accttcccaa aaatcgccag atctctgaac gctcctcacg
       61 actaaaaata cccacacact acgcaaaatt aaaattttgc agataactcc ttattatcag
      121 ttggttaggt tttattaaat tacgcagtat taccttctgt aaggtcaatc caagtcgtcg
      181 gtgattcgtg tacgacttgc cgacgactcg tcatagagtc atcgacgact cactccacac
      241 tatcagtaac ttatgacgac ttgactctag agtcgaatcg tcgctttggc gtttttatga
      301 ccgtggtgac tctagagtca agtcacgagt cgaatcgccg gtgaatcgtg tggtgagtcg
      361 tccggcgact tgccataacg tgattgccgg ccgtcgacga acccgattcc tgaacgtgct
      421 gacagcgggt tttccggctg cgccggcaac gcttcacggc cacgcaataa attgcgtccc
      481 cgttcaccgt tttcggatgg gaagaacgcc ggaaacagga cttaccccgg ctgaatggcg
      541 tgaatttccg cgctatgcac ttgcgcgcat actcatgcat gccgtaaaaa cagagcctgc
      601 gcgtttctgg cgggttttcg ggtggtttgt tgcctgtttt gccggtttcc cgtcagaaac
      661 gccctgaggg cctctcaggt ggtgcacgca agggatgtta tggtaaatga ataacaccgt
      721 tacggtgttg gtatctctcg gtgttaccag gctataggtg ttgtctttta attgttctgc
      781 tatatattac ttgatgggtg tctttaatat gaaaatacac ttggcgttcg ttgtttttag
      841 tggcttttta atatctggtt gtgatggtga caaggatata aacaaagtaa aatcttatgt
      901 tttttctgat atagataact ctagggactt gggtacggta atgtctcata gagatgcttg
      961 taagagtggg gagtggcata gtgaggttga tagatcaggc agaaagatag ttacatactc
     1021 atgtgttctt gatcatgaaa tgataaataa catgttatcc gcagaactag aaagaacaag
     1081 gaatgatcag atattaaaat actcaaaaga gattgaacaa ctggataggt atgacagtat
     1141 tgtcaaggat gcatatggcg ccgcattatc taatctagcg gctattcaat ccgagtatga
     1201 tgagcttaag aaccctgacg gatcgatctc cccagagctg aggtcgaaga ttgatctaat
     1261 gaaaagtgct gattctgaat cattaatgga gcggcgagca gggttgccat atgatgctga
     1321 tgacgcagtt gcgtcgttat catctgtttt tgagtatgtt gatctttatt cagggcaaga
     1381 tatagaaaag gcaaaaggaa ttttatcaaa ttcatataat gattatatta aaaaatcatc
     1441 atccgagcgt gatagaaata ttgggattat aaacaaggct aaaggttctg gggtgtcttt
     1501 tggtttgaaa tcagctggta gtgatattta tttttcatcc aacccatcat cagagcaacc
     1561 tgtttctttt gttgggatga aatacacgtt caataataac ggaagggaaa cttcgacgac
     1621 taatgggtct ttggtttatg tttataatgg ccgtgagatg agttatatca aggcatttgc
     1681 aactgcctat ttaattaata ggtagttaat ggcgaagatt ttttatacgg aattattttt
     1741 gattagttct tgctgaatat tgtggatagg gatagtatca agaaaaagcc gcccagcaag
     1801 gcggcttttc aagggtctca gtgtcagcaa acactttgaa ccgaggtaac tggcttggag
     1861 gagcgcagtc accaaaactt gtcctttcag tttagcctta accggggcat aacttcaaga
     1921 ctatctcctc taaatcagtt accaatggct accgccagtg gcgctttgtc gtgtctttcc
     1981 gggttggact caagttgata gttaccggaa caggcgtggt agtcggactg aacggggggt
     2041 tcgtgcatac agtccagctt ggagcgaact gcctacccgg aactgagtgt caggcgtgga
     2101 atgagataaa cgcggccata acagcggaat gacaccggta aaccgaaagg caggaacagg
     2161 agagcgcacg agggagctac cagggggaaa cgcctgggat ctttatagtc ctgtcgggtt
     2221 tcgccgccac tgatttgagc gtcagatttt gtgatgcttg tcaggggggc ggagcctatg
     2281 gaaaaacggc ttcgccgctg cctcatcgct tccctgttaa gtttcttcct ggtatcttcc
     2341 tggaaatttc gccccgcccg taagccggca ccgctcgccg cagccgaacg accgagcgca
     2401 gcgagtcagt gagcgaggaa gcggaatata tcctgtatcg catgttctgc ttacgctccg
     2461 ctgctgtact tttctcctgc cacatgaagc actttcctga taatcgcact catgccaaca
     2521 tattaagcca gtatacactc cgctagcgct acgtgactgg ttcagggctg cgccccgaaa
     2581 cccgcaacaa cctctccgct actggatatc accccatgcc atctgaatat gatgaacaac
     2641 gggattcgac tgatacgcag cttcccggcg aatatgacct ttttgattta atggcgaagg
     2701 ttactgaaga gaacctgcat gcccctgtgg attctgggcc gtctgtcggc cgggaagcgt
     2761 tatagctttt tcgcttgctc gcgtacgtgg taatacgccg gtattacatt ttatttcttt
     2821 attttcatgt ggttacaggt gattgtaata cgttgcgtat tacataaata aacggagatt
     2881 tcaattttta ccttttaatt catgcagttg cgatgaaaat cgcggctgcg ttaggtgtat
     2941 gaccatttaa gggccaaaaa attatcattc tggccgggtg atctgcggag gttaaggggc
     3001 gtcggtgaca aaaaaacgtc attaacgacc tcgttcatgc tcgcatgaac ggattatttt
     3061 tccggactac aggtaaacta cagaaagact acaaaagctg atgacttaat cctgattttt
     3121 agtgcgatga ctacagataa actacaaaat aactacagga ttacctcaga tccgttctct
     3181 gaaccattcg tacatccgac ccccttaccg gttttacact gagcactgat gctctgagat
     3241 cccttatgac gaaacaacag aaaacagcgc tgaacatggc taaattcatc cagaatcagt
     3301 ctctgctcct gctggagaag cttaacgagc ttgatctcga tgctgaggcc gacctttgtg
     3361 agaaactcca cgatgatgcg gagcatcttt tccgtacact gtcctcgaga ctggatgaat
     3421 tacaggatgg taactgatgg ccagagtgtc tattagtgaa gcggcacggc ttgttaaggt
     3481 tagtcgcccc acaatttaca agatgattaa cagtgggaag ttaagttaca cctctgttgt
     3541 aaagcacggg aaggctatta aagttattga tacttcagag cttattagag tgtttggttc
     3601 tcttgatggt gtcatcgata ctgtaaaata tgatgtaaaa agtgacgcag aatctacagg
     3661 tgttaacagc gttgatttac atgatttaca acatagaatt gctttactag aagctgaaaa
     3721 cgatggtctt aaaggggctg ttaaggctcg agatgagcat attgattccc ttcgtcaggc
     3781 aatgcagctt ctggagcaca agcacgaacc ttcttcacca cccgattccc cgtggtggaa
     3841 attctggaaa aaatcctgat cctgccatgc ttgagttttc ctctccgg
//
