LOCUS       NZ_LR890364             4424 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF049 isolate INF049 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890364
VERSION     NZ_LR890364.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357023
            Assembly: GCF_904863365.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:43:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,553
            CDSs (total)                      :: 5,425
            Genes (coding)                    :: 5,294
            CDSs (with protein)               :: 5,294
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 61 of 131
            Pseudo Genes (incomplete)         :: 69 of 131
            Pseudo Genes (internal stop)      :: 26 of 131
            Pseudo Genes (multiple problems)  :: 20 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890364.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4424
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF049"
                     /isolate="INF049"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            362..928
                     /locus_tag="JMW75_RS27605"
     CDS             362..928
                     /locus_tag="JMW75_RS27605"
                     /inference="COORDINATES: protein motif:HMM:NF016205.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_201519748.1"
                     /translation="MLEKIIKNNRLRVYDVDFFRGDSFQITSKDPINLLSIAVYIRAYL
                     RSYSEKNDDKGMYDARLAISIDKVNKYRRDVNSIFESAQIKSGRSLDLIENNEMMVFDS
                     SLYDLKEIYSPSVILLDALLSMLSKPQSEILREIVYDRDASISEIAEKLGKSKQVVYKT
                     IKRGSVDKIVKFLDAHLSLVGIRFF"
                     /name="hypothetical protein"
     gene            939..1937
                     /locus_tag="JMW75_RS27610"
     CDS             939..1937
                     /locus_tag="JMW75_RS27610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001477600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3307 domain-containing protein"
                     /protein_id="WP_201519749.1"
                     /translation="MGHGVIVLFLLLLLVHIIFDFYLQTEVMVREKSFDNGFVRALKAH
                     LFHAAMHGFFLCLSCFAFIYGFLSCTNLLNLKLFVFLLILFTLCHFLTDVIKSLTYLKI
                     KGFYSFFIFLIDQVFHILTILFVICYFFNDYGVYIYDFDFVKYIGGMLVFACAIAFLLK
                     PSSIIVYLFFKSSGIGDGSENVKITKSKIAELLYAVLHKDLGDSNIADYTLVVSKYKEK
                     AEKIVIGISNGQADINISSISKVNNAGRFIGYLERLIIFLFLILGSVTAVVAVLAMKTA
                     LRFSDLKDDNDSGKAEYIMIGTFFSLIITVIISMLARMYLIEIGIKINDFS"
                     /name="DUF3307 domain-containing protein"
     gene            2767..2958
                     /locus_tag="JMW75_RS27615"
     CDS             2767..2958
                     /locus_tag="JMW75_RS27615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_048218758.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLTARLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2958..3359
                     /locus_tag="JMW75_RS27620"
     CDS             2958..3359
                     /locus_tag="JMW75_RS27620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_201519747.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADHSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(4202..4411)
                     /locus_tag="JMW75_RS27625"
     CDS             complement(4202..4411)
                     /locus_tag="JMW75_RS27625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgH/BhsA/McbA-like domain containing protein"
                     /protein_id="WP_009310047.1"
                     /translation="MKSIKTFVAVAALSMMSFGAFAQSVSATASTLDRAEAKIAAQAAE
                     QGASYKITSAQFNNRVHMTAELTK"
                     /name="YdgH/BhsA/McbA-like domain containing protein"
     Typing          complement(2243..2646)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.556"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aagtcatttt gttctgtatg gggcgttgtt gccctgatgt gataaatgat agaacgacca
       61 cagggtgatt aaaatcgaaa caatttgcgg atattattca aaaaaataga acaaaaattg
      121 agtaccttag aactaagaag catcaagcta tcgaagtaaa ccaaaatggg ttactttttt
      181 gtttttcaac ctttttggtt gactgctttc cttttcggtt gtgcaatctg tcaagaatta
      241 ttttagtttg gggtgtgaaa tgagtgattc agggttaatg atgggggtta tcactggtga
      301 tttgtatcgg tctagcaccg attacgaacg aggggtttct tacattggct tgatggagat
      361 catgttagaa aagataataa aaaacaatag gttaagggtt tatgatgttg atttttttcg
      421 aggggattca tttcagataa ccagcaaaga tcctattaat ttattaagta ttgctgttta
      481 tattagagct tatttaagat catatagtga gaaaaacgat gataaaggga tgtatgatgc
      541 tcgattggcg atatccatag ataaagttaa taagtataga agggatgtta actcaatatt
      601 tgaatcagct cagataaaat cagggcgaag tttagatctc attgaaaata atgaaatgat
      661 ggtcttcgac tcatcacttt atgatttaaa agaaatatac tccccatctg ttattcttct
      721 cgatgcattg ctttcaatgt tatccaaacc tcaatcagaa atcctgaggg agattgtata
      781 tgatagggat gcaagcattt ctgaaatagc agaaaaactg ggaaagagta aacaggttgt
      841 ttataaaacc ataaaaagag gctcggttga caagatagtt aagttcttgg atgctcatct
      901 ttcactggtt ggaataagat ttttttaagg gatggggtat ggggcacggt gtaattgttc
      961 tatttttgtt gttgctgttg gttcatataa tttttgactt ttatttgcaa actgaggtga
     1021 tggttagaga aaagtcattc gataatggct ttgttagggc tttaaaggct catttatttc
     1081 atgctgctat gcatggattt tttttatgtc tgtcttgttt cgcttttata tatggatttc
     1141 ttagttgcac taatctatta aaccttaagt tatttgtttt tttgcttatt ttatttacac
     1201 tttgtcattt tttaacagat gtcatcaagt cacttaccta tttgaaaata aagggttttt
     1261 actctttttt tattttcttg attgatcagg tttttcatat tttaactata ttgtttgtta
     1321 tttgttattt ctttaatgat tatggggtat acatatatga ttttgatttt gtaaaataca
     1381 ttggtgggat gctggtattt gcttgcgcta tagcattttt actaaagcct tcatctatta
     1441 tagtttactt attctttaaa tcatcaggta ttggtgatgg ttcagagaat gttaaaataa
     1501 ctaaaagtaa aatagcagag ttgctttacg ctgtattgca taaagattta ggtgattcta
     1561 atatcgcaga ttacacattg gtagtaagta aatataagga aaaagcagaa aaaattgtta
     1621 tcggtatttc taatggacaa gctgatatta acattagttc tatttccaaa gttaataatg
     1681 ctggtagatt tataggttac cttgaaagat tgataatttt tttgttcttg attttaggct
     1741 cggttactgc ggttgtcgcg gtgttagcaa tgaaaaccgc cctgagattt agtgatttaa
     1801 aagatgataa tgatagtggg aaagctgaat atataatgat tggtacgttt tttagtctta
     1861 ttataacagt gataatatct atgttagcta gaatgtactt gattgagatt ggtataaaaa
     1921 tcaatgattt tagttagctt aatctcagtt tctagcaatc acataagaag atgaaggttg
     1981 caatgatatc aatggaatga tgatgtattt tcatatctga gaaggatctc cttgagatca
     2041 tttatatctg cgcgtaatct cttgcactga aaacgaaaaa accacctggg gaggtggttt
     2101 gatcgaaggt taagtcagtt ggggaactgc ttaaccaggt aactgtcttg tgcgagacga
     2161 gtcaccaaaa ctgttctttc agtgtagctg tagtccggcc atcacttcaa gcactctcta
     2221 aaatctctcg cacatcgacg cttaccaatg gctgctgcca gtggcatttt ttcgtgtctt
     2281 tccgggttgg actcaagacg atagttaccg gataaggcgc agcagtcgga ctgaacgggg
     2341 ggttcgtgca tacagtccag cttggagcga actgcctacc cggaactgag tgtcaggcgt
     2401 ggaatgagat aaacgcggcc ataacagcgg aatgacaccg gtaaaccgaa tggcaggaac
     2461 aggagagcgc acgagggagc catcaggggg aaacgcctga tatctttata gtcctgtcgg
     2521 gtttcgccac cactgatttg agcgtcagct tctgtgatgc ttgtcagggg ggcggagcct
     2581 atggaaaaac ggccgcttcg cggcctttcc ttttccccgt cacgcgaccg ctcggttttc
     2641 tcgagctttt acacgcatgc tcctgccgct cgccgcagcc gaacggcagg agcatagcga
     2701 ctgagtgagc gaggaagcgg aaaagagaac atccctacac tgagcactga cgctctgagg
     2761 cctcttatga cgaaacaaca gaaaacagcg ctgaacatgg ctaaattcat ccagaatcag
     2821 tctctgctcc tgctggagaa gcttaacgag cttgatcttg atgtagaggc cgacctttgt
     2881 gagaaactcc acgatgatgc ggagcatctt ttccgtacac tgaccgcgag actggatgca
     2941 ttacaggatg gtaactgatg gccagagtgt ctattagtga ggctgcccga ctgacgggta
     3001 agagtagaac aacactgcac aggttaatta aagcaggtga cctgtccacc tgtagcggtg
     3061 aacgcaatgc aaaaatggta gatacttcag agcttttacg tgtctttggt ccctttgagc
     3121 aaccgaaggg tgaacaccat tctggacagg tctctgaaca gcgtgataca gcctctgctg
     3181 accatagtga acaggtgatt cgtcatctga aacaggagat tgaacacctg aataccttac
     3241 ttttgtccaa ggattcgcac attgacagcc tgaaacaggc catgctcctt cttgaaaatc
     3301 accaggcaaa attaactgaa tccccggcgc catggtggaa attctggaaa aaatcctgac
     3361 cccgtcatgc ttcagttttc ctctccggcc atcccgggga gttcctgaac cttccaaaaa
     3421 atagtcagat ctctgaacgc tcctcaccac taaaaatacc cacaccccac gcaaaattaa
     3481 aattttgcag atttgtattt aatatcagta gtttactttc ctgaaatttc gttttttaaa
     3541 ttttatttat atagatccga ctctatgacg actcgtcata gagtccccgg cgagtcgtca
     3601 tagagtcggt aacgactcag gactataaaa acaatgagtt aataacgacc cgactctaga
     3661 cccgactccc cgtttggttg ttttttagac gcggcgactc tgggtacgac tctagtgcag
     3721 agtcgccggt gaatcgtgtg gtgagtcgtc cggcaacttg ccataacgtg attgccggcc
     3781 gtcgacgaac ccgattcctg aacgtgctga aaaccggttt tccggctgcg ccggcaacgc
     3841 ttcacggcca cgcaataaat tgcgtccccg ttcaccgttt tcggatagga agaacgccgg
     3901 aaacaggact taccctggct gaatggcgtg agttttcgcg ctatgcactt gcgtgcatac
     3961 gcatgcatgc cgtaaaaaca gagcctgcgc gtttctggcg ggttttcggg tggtttgttg
     4021 cctgttttgc cggtttcccg tcagaaacgc cctgaggccg ttttagcggt gcgtacaatc
     4081 atgcctttat gttaaatgac agatgcaaaa aagcccccga aggggcctga aggttttcct
     4141 gctaagggac gaaacgggcc gcctcccggc gacctgttcg gcagatccct ctgcgaccat
     4201 cttatttggt cagttcagcc gtcatgtgga cacggttatt gaactgagcg ctggtgattt
     4261 tgtatgacgc accttgttca gcggcctgtg cggcaatttt tgcttcagca cgatccaggg
     4321 tggaggcggt agcactgacg ctctgagcaa aggcaccgaa agacatcatg gatagagcgg
     4381 caactgcaac gaaagttttg atggatttca tggtcgtatt cctt
//
