LOCUS       NZ_LR890359             2667 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF231 isolate INF231 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890359
VERSION     NZ_LR890359.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357192
            Assembly: GCF_904863285.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:24:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,484
            CDSs (total)                      :: 5,362
            Genes (coding)                    :: 5,258
            CDSs (with protein)               :: 5,258
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 50 of 104
            Pseudo Genes (incomplete)         :: 50 of 104
            Pseudo Genes (internal stop)      :: 18 of 104
            Pseudo Genes (multiple problems)  :: 13 of 104
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890359.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF231"
                     /isolate="INF231"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2013-11"
     gene            140..415
                     /locus_tag="JMV88_RS27300"
     CDS             140..415
                     /locus_tag="JMV88_RS27300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001490769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="WP_224935441.1"
                     /translation="MQFRIESETKKMAKQALEKKGISLSDALRAFLDKLAATEKVMTKE
                     ETWLKEQIEETFSRVDKGEIRYYSEDEADERMNSFISKIENKHETA"
                     /name="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
     gene            complement(1902..2165)
                     /locus_tag="JMV88_RS27305"
     CDS             complement(1902..2165)
                     /locus_tag="JMV88_RS27305"
                     /inference="COORDINATES: protein motif:HMM:NF016876.2"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_004099073.1"
                     /translation="MTSKVLWADKALSDRETIFESNDKVSGLSYAKSEDAKIKRAVSTI
                     KRNNKVGRNDLDVRGYVYVLPKRYKILYRLTDEHIFIERVFY"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(2177..2572)
                     /locus_tag="JMV88_RS27310"
     CDS             complement(2177..2572)
                     /locus_tag="JMV88_RS27310"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071067467.1"
                     /translation="MAFVSQVDKSRAASSRIGDSSIVVTQSYKASTKAQELSIRLTSLV
                     LSKGGMKIGDHVDVLYDKDSDRWMLRKMDGGLKITGKDDAPTGLIRYTLKDTHARFTEE
                     KEHLPIRKSSIEDSLEIEDGQIIFKLD"
                     /name="hypothetical protein"
ORIGIN
        1 tcaaaatccg aagaaaaaag ttactttttt ccaagcataa atctaagaaa ggaagcattg
       61 actgtaggga tcccagagtc tattgtgagc acaaacgtac tcacaataga ctctgggatc
      121 tatatctatg gaaacaaggg tgcaattcag aattgaatct gaaacaaaga aaatggcaaa
      181 gcaagcgctt gaaaagaaag ggatttcact tagcgacgcg ctaagggcgt ttctcgataa
      241 gttagcagcg acggagaagg ttatgacaaa agaagagaca tggctgaaag agcagataga
      301 agagacattc tcaagggtag ataaaggaga gatccgctat tactcagaag atgaagctga
      361 tgaacgcatg aactccttca tctcaaaaat cgagaacaaa cacgaaactg cataaaaaaa
      421 gccgccaatg gcggcttttt ttatgccctt atttaccata atcccttaat tgtacgcacc
      481 gcccaagcgg tctcagggcg tttccgacgg gaaaccggta aaacaggcaa caaacaaccc
      541 gaaaccccgc cagaaagcgc aggctctgtt tttacggcat gcatgagtat gcgagcaagt
      601 gcataacccg gaaattcaca ccattcagcc agggtaagtc ctgtttccgg cgttcttctc
      661 ctccgaaaac ggtgaacggg gacgcaattt attgcgtggc cgtgaagcgt tgccggcgaa
      721 gccggaaaac cggttttcag cacgttcagg aatcgggttc gtcgacgacc ggcaatcacg
      781 ttatggcaag tcggcggacg actcaccaca cgattcaccg gcgattcgac tcgtgacttg
      841 actctagagt cgccaaggtc acaaaaacac caaaatgacg attcgactct agagtcaagt
      901 cgtcataagt tactgatagt cttaagtgag tcgtcgatga ctctatgaca agtcgtcggc
      961 gattcgtgta cgacttgccg acgacttgga ttcaccttac agaaagtaat gctgcctaat
     1021 ttaataactc acaactaact gatattaatg agttatcttc aaaattttaa ttttgcgtgg
     1081 ggtgtgggta tttttagtgg tgaggaacat tcagagagtt acctgttttc gggaaggttt
     1141 aagaacatac ccgaaaggaa aatgagaaac cggagcgtca ggcagctccg ggtaacacgg
     1201 tgactcttcc gcttcctcgc tcactgactc gctacgctcg gtcgttcgac tgcggcgagc
     1261 ggtggggctt ttacacaaag gagtccatga aagtgagaaa caaaagatga gcactggccg
     1321 tttttccata ggcttcgccc ccctgacgag catgacaaga tcttacgctc aaatcagtgg
     1381 tggcgaaacc cgacaggact ataaagatcc caggcgtttc cccctggtgg ctcccccgtg
     1441 cgctctcctg ttcctgccgt tcggtttacc ggtgtcactc cgctgttatg gccgcgttta
     1501 tctcattcca cgcctgacac tcagttccgg gtaggcagtt cgctccaagc tggactgtat
     1561 gcacgaaccc cccgttcagt ccgaccccca cgacaaacaa gcaactcgac tcttgaatcc
     1621 aatcttgttt gactcaaatt atgacaatgg tggaagcccg taataactga tttgcggagc
     1681 gcagaaagaa ggtaagcaag gatatcttga agtgagcagt gaactacggc tacactgaaa
     1741 gaacagtttt ggtgactgcg ctccgctaaa gccagttacc accagtccaa tgagttggta
     1801 gctcaaagga ctacgaagaa accaccgttg gtagcggtgg ttttcttcat cccaagatta
     1861 atagctaaag agacgcgcag tcaagaaagg tcggcaaacc atcagtagaa aacgcgctca
     1921 ataaaaatat gctcatccgt cagtcggtac aaaatcttgt atcttttagg tagaacatag
     1981 acatagcctc gcacatctag gtcatttctg cctactttgt tgtttcgttt tatcgtggaa
     2041 acagcacgtt taattttggc atcttctgat tttgcatacg acaaaccaga gaccttatcg
     2101 ttagactcaa agatagtctc tcgatcagat aatgccttat ctgcccataa aactttagaa
     2161 gtcatcaaac ctcccgctaa tcaagcttaa aaataatctg cccatcctca atctccagag
     2221 aatcctcaat agaggattta cgaataggga ggtgctcttt ctcttcagta aatctcgcat
     2281 gcgtatcctt cagggtatat ctaatcaaac cggtcggggc atcatcctta ccagtaatct
     2341 ttaaccctcc atccatcttt cttaacatcc agcgatcact atctttgtca tagagaacat
     2401 caacgtgatc gccaattttc atcccacctt tagacaacac taatgatgtc aacctaatgg
     2461 atagctcttg agccttagtc gacgctttgt atgactgcgt taccactata gacgaatcac
     2521 caatccgact cgaagcagct ctagacttat caacctgact aacgaacgcc ataaaacctc
     2581 ctggtagttt atattcatgt ttataatacg atcggataaa acacttagca acacagatct
     2641 atgtttttag ctgatctcta aactctc
//
