LOCUS       NZ_LR890358             3664 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF231 isolate INF231 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890358
VERSION     NZ_LR890358.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357192
            Assembly: GCF_904863285.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:24:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,484
            CDSs (total)                      :: 5,362
            Genes (coding)                    :: 5,258
            CDSs (with protein)               :: 5,258
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 50 of 104
            Pseudo Genes (incomplete)         :: 50 of 104
            Pseudo Genes (internal stop)      :: 18 of 104
            Pseudo Genes (multiple problems)  :: 13 of 104
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890358.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF231"
                     /isolate="INF231"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-11"
     gene            complement(474..875)
                     /locus_tag="JMV88_RS27280"
     CDS             complement(474..875)
                     /locus_tag="JMV88_RS27280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_201511864.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGECNAKMLDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLSSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(875..1066)
                     /locus_tag="JMV88_RS27285"
     CDS             complement(875..1066)
                     /locus_tag="JMV88_RS27285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1837..2277
                     /locus_tag="JMV88_RS27290"
     CDS             1837..2277
                     /locus_tag="JMV88_RS27290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019704629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VapD"
                     /protein_id="WP_064190918.1"
                     /translation="MSKYLITFDLDTTKLKTLYHGKNYNNAYYDIRSTLSRRGFENIQG
                     SVYLGQEGISEAHGTIAIQELTAKYSWFYECVSNIKFYRIESDLNAQFIADGVNEARKR
                     FYTQLEDMRKSLLSVGLTVEQVNDIIGQQQFKLESTISPDKM"
                     /name="VapD"
     gene            2284..2649
                     /locus_tag="JMV88_RS27295"
     CDS             2284..2649
                     /locus_tag="JMV88_RS27295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_130945504.1"
                     /translation="MKMVFLLIMTLWWASSFITHLMKVGSTREYGATKSHLLLMITTLP
                     AGVGVFIYPIAEAVWGELPLLKIVGYTALSLIIGGVVGNIVVRGLFSTSLGILFINPLA
                     MIFSLTGIAFLIVQYLP"
                     /name="hypothetical protein"
     Typing          1188..1590
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.901"
                     /coverage="99.0"
                     /evalue="2.21e-145"
ORIGIN
        1 tgcgtggccg tgaagcgttg ccggcgcagc cggaaaaccg gttttcagca cgttcaggaa
       61 tcgggttcgt cgacggccgg caatcacgtt atggcaaatc gccggacgac tcaccacacg
      121 attcaccggc gactcttcac tagagtcgta cctagagtcg ccgagtctaa aaaacaacca
      181 aacggggagt cgtgtctaga gtcgggtcgt tattaactca ttgtttttat agtcctgagt
      241 cgttaccgac tctatgacga gtcgtcatag agtcggatct atgtaaataa aatttaaaaa
      301 acgaaatttc aggaaagtaa accactgata ttaaatacaa atctgcaaaa ttttaatttt
      361 gcgtagtgtg tgggtatttt tagtcgtgag gagcgttcag agatctggcg atttttggga
      421 aggatcagga actccccggg atggccggag aggaaaactc aagcatggca ggatcaggat
      481 tttttccaga atttccacca tggcgccggg gattcagtta attttgcctg gtgattttca
      541 agaaggagca tggcctgttt caggctgtca atgtgcgaat ccttggacga aagtaaggtg
      601 ttcaggtgtt caatctcctg tttcagatga cgaatcacct gttcactctg gtcagcagag
      661 gctgtatcac gctgtccaga gacctgtcca gaatggtgtt cacccttcgg ttgctcaaag
      721 ggaccaaaga cacgtaaaag ctctgaagta tctaacattt ttgcattgca ctcaccgcta
      781 caggtggaca ggtcacctgc tttaattaac ctgtgcagtg ttgttctact cttacccgtc
      841 agtcgggcag cctcactaat agacactctg gccatcagtt accatcctgt aatgcatcca
      901 gtctcgagga cagtgtacgg aaaagatgct ccgcatcatc gtggagtttc tcacaaaggt
      961 cggcctcgac atcgagatca agctcgttaa gcttctccag caggagcaga gactgattct
     1021 ggatgaattt agccatattc agcgctgttt tctgttgttt cgtcataaat ggcctcagag
     1081 cgtcagtgct cagtgtaaaa ccagtctctt ttccgcttcc tcgctcactc agtcgctacg
     1141 ctccggtcgt tcggctgcgg cgagcggcag gagcatgcgt ataaaagctc gagaaggccg
     1201 agcggtcaaa tggggaagaa ggaaaggccg caaagcggcc gttttttcat aggctccgcc
     1261 cccctgacaa gcatcaccga agcggacgct caaatcagtg gtggcgaaac ccgacaggac
     1321 tataaagata cctatcattt ctgataggcg gctccctcgt gcgctctcct gttcctgcca
     1381 ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt atctcattcc acgcctgaca
     1441 ctcagttccg ggtaggcagt tcgctccaag ctggactgta tgcacgaacc ccccgttcag
     1501 tccgactgct gcgccttatc cggtaactat cgtcttgagt ccaatccgga aagacacgac
     1561 ttatcgccac tggcagcagc cattggtaac agaaccaggt ggatttagat attaagagtc
     1621 ttgaagtgat ggccctacta cggctacact ggaaggacag tatttggtat ctgtgctcca
     1681 ccaagccagt tacccggtta agcagttccc caactgactt aacctttgaa aaaaccgcct
     1741 ccccaggcgg tttttttcgt ttaacgtcgg taagatacgc tttagggttc cagctagtca
     1801 agctggctac taaaagttaa taagcacagg aaaaatatga gcaaatacct gattacattt
     1861 gaccttgata caacaaagtt aaaaaccttg tatcacggca agaactacaa taatgcttat
     1921 tacgatattc gaagcacgtt gagtcgacgc ggctttgaaa acatacaagg tagcgtttat
     1981 ttaggtcagg aaggtataag tgaggctcac ggaaccattg caattcaaga gctaacagct
     2041 aaatacagct ggttctatga atgcgtatct aacataaaat tctatcgtat agaatctgat
     2101 ttaaacgcac agtttatcgc tgatggcgtt aacgaagcga gaaaaagatt ctatacccaa
     2161 cttgaagata tgcgcaaaag tttactatcc gttggtttaa cagtagaaca agtaaacgac
     2221 ataataggtc agcaacaatt caaattagaa agcacgataa gccctgataa aatgtgagca
     2281 taagtgaaaa tggtttttct tcttataatg acgctatggt gggcatcctc attcatcact
     2341 catctaatga aggttggtag caccagagag tacggtgcaa ctaaatctca tttacttttg
     2401 atgatcacca cacttcccgc tggagttggc gtctttatct acccaatagc agaagctgta
     2461 tggggtgagc taccgttact gaaaattgta ggctataccg ccttatccct cattataggg
     2521 ggggttgttg gcaacatagt cgttcgtgga ttattttcaa cttcgctggg tattttgttt
     2581 ataaatcccc tagcaatgat cttcagtcta acaggtatag cattcttaat cgtgcaatac
     2641 ttaccataac attaatccca acgcgcatga aaaggcccgc actacgggcc tttttttaga
     2701 agagatgtgt ctacgtttca acttagcttc aatagaggca ccggcaacat acaaaatatc
     2761 cgcattttaa tactagccac cgagcgtttt ctacgcatcg ctatcaacaa tacacgagca
     2821 atctgatcgg gcataaaatt tcagaaaccc actaaactca tccaaggaag agtaaaacat
     2881 aagctattga taaaaaataa ttttatattt ttagaaaagt actgaatgtt ctttcgcggc
     2941 aaacggttca ataaaaatga gcataagagc aagttggaag gcacttttga gtacttgata
     3001 ggagacttaa aaatgataat tacaattgag ttaaaagggg cattaatggc caaaaatcac
     3061 tcagagtata aggttttgtt tgagggtaaa tatttcgcgg taatatggat actatagatg
     3121 catcagcgaa cgtcggcgaa cgtcggcgaa cgtcggcgaa cgtcggaata aaaatcaatt
     3181 aaatatcaca tcaagataaa aacaataaaa aattaaaaat aagtactgaa tgttctttcg
     3241 cggcaaacgg ttatataaaa attagcatca gagcaagttg gaaggcactt ttgagtacta
     3301 acaaacactc ctctcactcc gctgtaggga ccagtaaccc caaccattcg atgccattta
     3361 ccgtcaaaac gtccaattat ctatcgtatt ttatttaaca taacactatt ttacgtctgt
     3421 catttaacat aagaccttga ttgtacgcac cgctaaaacg gcctcagggc gtttctgacg
     3481 ggaaaccggt aaaacaggca acaaaccacc cgaaaacccg ccagaaacgc gcaggctctg
     3541 tttttacggc atgcatgagt atgcacgcaa gtgcatagcg cgaaaattca cgccattcag
     3601 ccagggtaag tcctgtttcc ggcgttcttc ccatccgaaa acggtgaacg gggacgcaat
     3661 ttat
//
