LOCUS       NZ_LR890342             1433 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Escherichia coli strain MINF_9A isolate MINF_9A plasmid 9, complete
            sequence.
ACCESSION   NZ_LR890342
VERSION     NZ_LR890342.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357504
            Assembly: GCF_904863255.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/25/2023 10:13:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,377
            CDSs (total)                      :: 5,254
            Genes (coding)                    :: 5,054
            CDSs (with protein)               :: 5,054
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 73 of 200
            Pseudo Genes (incomplete)         :: 136 of 200
            Pseudo Genes (internal stop)      :: 37 of 200
            Pseudo Genes (multiple problems)  :: 43 of 200
            Pseudo Genes (short protein)      :: 5 of 200
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890342.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="MINF_9A"
                     /isolate="MINF_9A"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="9"
                     /geo_loc_name="Australia"
                     /collection_date="2014-01"
     gene            complement(139..360)
                     /locus_tag="JMW07_RS26575"
     CDS             complement(139..360)
                     /locus_tag="JMW07_RS26575"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_158414302.1"
                     /translation="MCKCNTVTRDDIPFAVWSGLRPDTPHQCVRAQCGFRFSSASSPTR
                     SLRSVAGAAASGVTSRMLSVIPLLFFRG"
                     /name="hypothetical protein"
     gene            694..1125
                     /locus_tag="JMW07_RS26580"
     CDS             694..1125
                     /locus_tag="JMW07_RS26580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001233485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_063269671.1"
                     /translation="MRRVTQIDQESGEELGGFVAVIRPKQKSSFQRHFTMNQAALITIA
                     NELNHDQIRVLMALLADLDYENYIQVAQIDIADALKMQKTNVSRAIKNLIDFGIIIEGP
                     RIGRSKTYRLNPQFGWKGTVSNHRKALKNGLSVIQGGRV"
                     /name="helix-turn-helix domain-containing protein"
     Typing          300..380
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="95.122"
                     /coverage="87.0"
                     /evalue="9.59e-28"
     Typing          complement(2..186)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.086"
                     /coverage="99.0"
                     /evalue="6.900000000000001e-74"
ORIGIN
        1 ggttaggggt atcggcgcgc ctgacctcct gagagcctct gtaagcgttt ttcgcgcctt
       61 ccatgccctg acgggcattt aaaacccgtt tcgtgtgtct gagagcttct gagcgcgttt
      121 gaggggctat ctggcgactc atccccgaaa gaacaacaac ggaatcaccg acaacatgcg
      181 agaggtgaca ccgctcgccg cagccccagc gaccgaacgt agtgagcgag tgggcgagga
      241 agcggaagag aaccggaaac cacattgagc acgtacgcac tgatgcgggg tgtcggggcg
      301 aagccctgac cagacggcaa acggaatatc gtcgcgggtg acggtattac atttgcacat
      361 cctgtcccga tttctgaggc gttttagcgg tgaacggacg gcaaaaccat gatggagctg
      421 ttgagcgttg agagcgtgaa atctggcaaa aatcacggct ggcgaggctt gtagcggaat
      481 aagccagtat acactccgct ggcgctacgt gactgggtca gggcttcgcc ccgacacccc
      541 atgaaaactt tgttttggtt gcgagagtaa taagatacag aagggggtct tctggaagcc
      601 gcgccagaag cgggatcttt tgacaaatag ttatcttgag agataactta gttatcttga
      661 gagataacta ttttctctag aacggaggaa gccgtgagaa gagttacaca gatagaccaa
      721 gagtcaggag aggagttggg cggatttgtt gcagttattc gtcccaagca aaaatcgtca
      781 tttcagaggc attttacgat gaatcaggct gcgttaatca cgattgcaaa cgaacttaat
      841 catgatcaaa ttcgtgtttt aatggctttg ctagctgatc ttgactacga aaactacatc
      901 caagttgcgc aaatcgatat tgcggatgca ttgaaaatgc aaaaaacgaa cgtcagtcgc
      961 gcaataaaaa acttgattga ttttgggatc atcatcgaag gaccaaggat cgggcgtagt
     1021 aaaacctatc gcttgaatcc tcagttcgga tggaaaggga cggtaagcaa tcacaggaaa
     1081 gcactcaaga atggtcttag cgtcattcag ggtggcaggg tttaaagagc cagcggcagg
     1141 cggacaatca ggggctacgt gttaacgttt tgaccatgat tgtctatcct gcattgctct
     1201 tttgccgcct caaaatccct tgcttgtttt tgctccccga tccccagaac gaccgcgccg
     1261 ccacggttcc ggcagcgcct tgagcgcaac cggaaaccgt ctggggagaa ccccagaccc
     1321 ccatcgctgt aacaccgacg gtctacgacc accaaccagc cgaatagctg cctgtgccgt
     1381 gcaaataggc tttgcagggg gctgacgcgg ttcctagcga cctgaaagcc cct
//
