LOCUS       NZ_LR890297             5585 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Klebsiella pneumoniae strain KSB1_1B plasmid 7, complete sequence.
ACCESSION   NZ_LR890297
VERSION     NZ_LR890297.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07738870
            Assembly: GCF_904863435.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 11:09:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,559
            CDSs (total)                      :: 5,431
            Genes (coding)                    :: 5,298
            CDSs (with protein)               :: 5,298
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 58 of 133
            Pseudo Genes (incomplete)         :: 80 of 133
            Pseudo Genes (internal stop)      :: 23 of 133
            Pseudo Genes (multiple problems)  :: 25 of 133
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890297.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5585
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KSB1_1B"
                     /isolation_source="Rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="7"
                     /geo_loc_name="Australia: Melbourne"
                     /lat_lon="37.81 S 144.96 E"
                     /collection_date="2013"
                     /collected_by="Adam Jenney"
     gene            join(5267..5585,1..314)
                     /locus_tag="JMW65_RS27655"
     CDS             join(5267..5585,1..314)
                     /locus_tag="JMW65_RS27655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015689667.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="WP_065878587.1"
                     /translation="MTSRVYAYLRASTKEQDASRAREQLDEFAHSKGMTIATYFTENES
                     GASLQRPELFRLLDIAQKDDVLLVEQVDRLSRLKADDWQVLRQTISSKGIRVVALDLPT
                     SHQLIQSGDEFTNRMLEALNGMMLDMLAAIARKDYTDRKRRQEQGISKAKEAGKYKGRP
                     EDAQRNEKIARLLNAGMSYTDIMGTVNCSRATVAKVSKSLKETGITG"
                     /name="recombinase family protein"
     gene            complement(550..1212)
                     /locus_tag="JMW65_RS27660"
     CDS             complement(550..1212)
                     /locus_tag="JMW65_RS27660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008320537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus-type Gp2 protein"
                     /protein_id="WP_048269942.1"
                     /translation="MNHAVTSHYDNGRYHLINSANYAFGDNTYSLNFKPDSKRYSPIRQ
                     EIMDSFITQLCAMQSHYSKIFAFRFDLSVPAGMPVAESNQLISELFTRLRGKFTAKRWN
                     GQPIKKFAYGWVREKEKAKQVHYHCWIALPHFQVRVAGFGNEGTYGLINTLWSELTAQK
                     GRSRPCNGTYTINRDDHSSLVALVERVSYLAKTRGKYSTGDGQRMFSASKLKILTAA"
                     /name="inovirus-type Gp2 protein"
     gene            complement(1340..1483)
                     /locus_tag="JMW65_RS27665"
     CDS             complement(1340..1483)
                     /locus_tag="JMW65_RS27665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020244645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_170320547.1"
                     /translation="MTVTKKGPPCPAYIDPEALEKAIAAARKIREANPERYKPIPVQPK
                     LF"
                     /name="hypothetical protein"
     gene            complement(1480..1986)
                     /locus_tag="JMW65_RS27670"
     CDS             complement(1480..1986)
                     /locus_tag="JMW65_RS27670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_048269941.1"
                     /translation="MTTKRQAQRATESDLQAFMNDAADRFKPDAAVLAARIDTAVQRYE
                     VTSTTQRFNAPAPLAMQQLQERILEGWRYDIGIPQSVYVAGTGNMSITLRKPASLVEQE
                     IADLKRQVEEGYHNELAAAMEREVDKLVQDAANEAQRRAEEAAAAERDAMRQRLRDMLL
                     SGATV"
                     /name="hypothetical protein"
     gene            2580..3026
                     /locus_tag="JMW65_RS27675"
     CDS             2580..3026
                     /locus_tag="JMW65_RS27675"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_201525435.1"
                     /translation="MSKQGKNLLNLTQAAEAVGITRKTLYSHIDKGLVSVTRQQGKRYV
                     DVSELIRYYGSVSLPEEKVNTVTRSQTKHNDDTILAMQRELVELRKLIERQQLLLEDKQ
                     EVDRLREQVTGLQNERDATAQELEKVKSELEAERKKGFWSKFFG"
                     /name="helix-turn-helix domain-containing protein"
     gene            3049..3453
                     /locus_tag="JMW65_RS27680"
     CDS             3049..3453
                     /locus_tag="JMW65_RS27680"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_043876050.1"
                     /translation="MKVVILLGAFVLSMLSINALSAEKPKDPWYEVSSNAAGDAKILAK
                     LDTVKKDETGVSVLIQILVKNLPGGNFSVKYYQMSISKKACDDGYGEVLFSPVSKKKQD
                     EFSSEYVEGGQSLGSFAAECLCYLYKKKAS"
                     /name="hypothetical protein"
     gene            4143..4634
                     /locus_tag="JMW65_RS27685"
     CDS             4143..4634
                     /locus_tag="JMW65_RS27685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142499556.1"
                     /translation="MAIGDDAIRDAFFFFAELADAMGNQGLPQDVWDTPCFTYLLTKKQ
                     FNQMKVVCQRNGWPMPVSPAVPITWAMFSHVLSARGNKDQLSWQECAEILSAAFSVQSN
                     VFVNRDYAEQSVVLNAIKRITVGGAGFFALAIVDVSGNKLAPVTAYHATEAKCKKIQGS
                     "
                     /name="hypothetical protein"
ORIGIN
        1 agctaatcca gtccggcgat gagtttacta accgtatgct ggaagcattg aacgggatga
       61 tgctggatat gcttgccgcc attgcacgta aggactacac cgaccgtaaa cgtcgtcagg
      121 agcaaggaat cagcaaggcg aaggaggctg gcaaatacaa gggtcgcccg gaagacgccc
      181 agcgcaacga gaagatcgcc agacttctga atgctggcat gtcatacacc gacatcatgg
      241 gaacggtgaa ctgttcccgt gcgacggttg ccaaagtgag caagagtctg aaagagaccg
      301 gcatcacggg ctaacccgcc ttccacaatc cagagtgccg acctgagacg gtcgggtgta
      361 ttgagatcct cgcgatgtgc ggggattttt ttattaaata acaatcattt agattgattt
      421 aatgtgagaa aaacggcggc gcgtggatcg ctgtgggcgt tactgtgcct gctgtcgtca
      481 aatctgtcat gggaaagacc ccagatattt ttcgtgtgca tatggctggc ccggtggaat
      541 cgaagccggt taagcagcag tcagtatttt caactttgat gcagaaaaca tacgctgccc
      601 gtctccagtg gagtatttcc ctcgcgtctt ggcaaggtat gagacccgct caaccagtgc
      661 taccagcgat gagtggtcat cccggttgat ggtgtatgtg ccattacacg ggcgtgagcg
      721 gcccttttgg gctgtgagct cactccaaag agtgttgatc aggccgtatg ttccctcatt
      781 gccgaatcca gcaactctga cctggaagtg aggtaatgcg atccagcaat ggtaatgaac
      841 ttgcttggcc ttctcttttt cccttaccca gccatatgcg aatttcttga ttggctgtcc
      901 attccatcgc tttgcagtga acttgccgcg tagtctggtg aacagctcac tgatcagctg
      961 attgctctca gctactggca ttcctgccgg aactgacagg tcgaaccgga aagcgaagat
     1021 tttgctgtaa tgggactgca tcgcgcagag ctgggtaata aagctgtcca ttatctcctg
     1081 acggattggc gagtagcgct tgctgtcagg tttgaagttc aggctatacg tgttgtcgcc
     1141 gaaggcgtag ttagctgagt tgataaggtg atatctgccg ttgtcgtaat ggctggttac
     1201 tgcatgattc aatgttcccc cagttgatgg ttggtatgta caggtattag taaaaaccag
     1261 tacggttact gctttagcaa agtctgccta tgccgcgcca ctgctgacgc ggagatgcaa
     1321 ttattgccag cgtttttact cagaaaagtt tcggctggac ggggatgggt ttgtagcgct
     1381 ccgggttggc ttcccggatt ttgcgagcgg cggcgatcgc cttttccagg gcctccgggt
     1441 cgatgtaagc ggggcatggt ggcccctttt tggtgacggt catacagtgg cccctgacag
     1501 gagcatatcg cggaggcgtt ggcgcatagc atcacgctct gcggcggcgg cttcttctgc
     1561 tcggcgctgt gcctcgttag cggcgtcctg aaccagtttg tctacctcac gctccatcgc
     1621 ggcggcgagt tcgttgtgat agccctcttc cacctgtcgt ttcaggtcgg cgatctcctg
     1681 ttccaccagc gacgccggtt tacggagggt gatgctcatg tttccagtac cggcaacgta
     1741 aacggactgc gggatgccga tatcgtaccg ccacccctcc aatatcctct cctgtagctg
     1801 ttgcatcgcc agtggtgccg gagcgttgaa acgctgtgtg gtgctcgtta cttcgtaacg
     1861 ttgtacggcg gtatcgatcc gcgcggccag cacggcggcg tctggtttga accggtcggc
     1921 ggcatcgttc atgaatgcct gtaaatcgct ctcagtggct ctctgagcct gtctttttgt
     1981 agtcatagtt gtctccgtaa tcggtgaata aaggccgtaa caggccgctg gcgctctctg
     2041 tgggcgtcat ttggtgtgac cgttcatgcg gtcatctttt cggtgtttgt gtctcagatg
     2101 gtcaggcgta ttcgccgtaa aaactctgtc cgcacgccgg gcaatgctgg ggagtatccg
     2161 gtgtaaacct gaaccaacga gtaacgtccc cgcgtccgaa agtgacccct gcgaggtggg
     2221 tgacttccag cgccgtgagc gttctgtacg cagtcgataa cgggaggtca acgaagcggc
     2281 tgatcatctc agcggttaca ggagtgtcgg ttgcgttcag gtagtgtaag acgttaatcc
     2341 ggggatttgt ggcgcggagg ccagtatcat tcaggatcgc ggcgagggtg gcgcgttccg
     2401 tatcggtcgg ggctgcaaac gttggcagtg tgggcgttaa ggtcaatatt tctcctgtct
     2461 tgtgtggttt attggtcagt tcctatttta tcacagatga gaaactttcg catctacaga
     2521 ttggctgttt ttttgtatac tatgcagagt aaacacatct attttatggc gggtatacgg
     2581 tgagtaaaca gggtaagaat ctactcaatc ttacacaggc tgctgaggcg gtaggtatca
     2641 caaggaaaac gctttactcc catattgata aggggttggt gagtgttacc cgtcagcaag
     2701 gtaaacgata cgtagatgta tccgagctaa tcaggtatta cggatctgta tccttaccag
     2761 aggaaaaagt aaacaccgtt acacggtcac aaactaaaca taatgacgat acaatcttgg
     2821 caatgcagcg ggagctggtc gagctgagaa agttgatcga gaggcagcaa ctgttgcttg
     2881 aggataagca ggaagttgac aggctgcggg aacaggtgac cgggttgcaa aatgagcgtg
     2941 atgcaaccgc tcaggagctg gaaaaagtga aatcagagct tgaggcggag aggaagaagg
     3001 ggttttggtc taaatttttt ggttaaaaaa ataacaagga aaattgagat gaaagtggtg
     3061 attctattag gcgcattcgt tttatctatg ctcagtatta atgctttatc cgctgaaaag
     3121 cctaaagacc cttggtacga ggtaagcagt aatgctgccg gggacgcgaa aattttagca
     3181 aaattagata ctgttaagaa ggatgaaaca ggtgtttctg tattgattca gatccttgtc
     3241 aaaaatctgc ctggtggaaa tttttctgta aaatactatc agatgtccat atcaaaaaaa
     3301 gcgtgtgatg atggttatgg tgaggtcttg ttttcaccag tatctaaaaa gaaacaagat
     3361 gagttttcct ctgagtatgt tgaaggcggt cagtcattgg ggtcatttgc ggcagaatgc
     3421 ttgtgttacc tgtacaaaaa aaaggcatcg taaaaacgaa tgcttgtgat cctttatctc
     3481 tcgtcgtagt ctcttgctta gaaacgaaaa aacccacgtt ctcaggcgtg ggttttaacg
     3541 ggtaaacggg ttttctcagg actcgtctac caggtaactg agtctttagc gggaacagct
     3601 acctaaaacg tgatctcagt gtatccgcct tacgcggtgc attcaagcta cagacgggcg
     3661 tttttgtgcc cgaatgcata tcagcaagtt cccgcactca agactcatta ccgtattggc
     3721 tgttgccatt agcggcgttt tgccgtgtcc gctggggttg gaatcgtgag aatagttacc
     3781 cagcaggcgc aacggtcgga tgaaacgggg agttcgtgca tatcatccag cttggagcga
     3841 accgcctaaa acgagcagtg ccagcatagg gaagctgaga gttagcgccc ccaaagtaga
     3901 aagagcggca aggctggctg caaacgtcaa ggtgggaaca caggagcgca cgagggagcg
     3961 actcatcgga aacggtgggg atctttaagc tgtgtcgggt ttcgccactc ttgatttgag
     4021 cgtctgaatt gtgatgctcg tcaggagggg cgaagccttc tgtaaaaggt tatcgctata
     4081 tgttttatac ggttaccttg cccgtgttaa gattctgcat tcttcctgtt taaggttcca
     4141 ttgtggctat tggtgatgat gctatccgtg atgctttctt ctttttcgct gagttggcgg
     4201 atgcgatggg gaatcagggt ttaccacaag atgtctggga cacaccgtgt ttcacttacc
     4261 tcttaactaa aaaacagttc aatcagatga aggtcgtttg ccaacggaat ggatggccta
     4321 tgcctgtgtc tcctgctgta cctatcactt gggctatgtt tagccatgtt cttagtgcga
     4381 gaggtaataa agatcagctt agttggcagg agtgtgccga aatcctatct gccgcttttt
     4441 ctgtacaaag taatgtgttt gttaatagag attatgcgga acagtccgtc gttcttaacg
     4501 cgattaagcg tattacggtt ggaggggcgg gattcttcgc gttagcgata gttgatgtct
     4561 ctggtaacaa attggccccc gtaactgcat atcatgcaac ggaggccaaa tgtaagaaaa
     4621 ttcagggtag ttgataggag ggacgcccat ttaagcaact ctcctcaatt gaatgagaat
     4681 gagccatagt gcctaaatac ttcccctcat cggttccttt cggatctaag cagcatcggc
     4741 gtttttctgc tgtctaacga ctacaactac attgtagcta agctgacttc gatattcaac
     4801 taaaggttga gtgttaccta tatactaact tttctctata tccctgcaat cccttgcggt
     4861 gtctgggttt cttgaaatca ccgactaaag agaccctata ttctaactgc atattctgac
     4921 ccccatgtcg ctgggcagat acaccccgcc cccagcggct ggatcgctga tacccccacc
     4981 atatgtaaac cggctggctg caaatatcct gccggtgatt gtacggctgg cgcatgggct
     5041 gaggtgttag gcggatgttc tcccccttca cgatttaccg ccgatctttt caaaatatct
     5101 gccggtgggt tgatcgatat gctggctgtc atgcggtctg gtttaggtat acctaaagag
     5161 gcactggttt attgaaccag tcaggccggg aaaaacattt attgaaccac tcttaataga
     5221 ctgttattat tgaaccacta aaaacagact gataagggat accgccatga catcacgtgt
     5281 ttatgcctac ctccgagcct cgactaaaga gcaggacgca tcacgcgcca gagagcagct
     5341 tgatgagttc gctcattcta agggtatgac cattgccacc tatttcacag agaacgagtc
     5401 gggagcgtcg ttgcagcgcc ctgagttgtt ccggttgctg gatatcgcac agaaggatga
     5461 cgtattgctg gtggagcagg tagaccgcct gagccgctta aaggcggacg actggcaggt
     5521 attgcggcag accatcagca gcaaggggat cagggttgta gcgttagact taccgaccag
     5581 ccacc
//
