LOCUS       NZ_LR890276             2136 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Escherichia coli strain MINF_7C isolate MINF_7C plasmid 7, complete
            sequence.
ACCESSION   NZ_LR890276
VERSION     NZ_LR890276.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357519
            Assembly: GCF_904863235.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/25/2023 10:14:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,338
            CDSs (total)                      :: 5,207
            Genes (coding)                    :: 5,011
            CDSs (with protein)               :: 5,011
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 196
            CDSs (without protein)            :: 196
            Pseudo Genes (ambiguous residues) :: 0 of 196
            Pseudo Genes (frameshifted)       :: 62 of 196
            Pseudo Genes (incomplete)         :: 139 of 196
            Pseudo Genes (internal stop)      :: 26 of 196
            Pseudo Genes (multiple problems)  :: 31 of 196
            Pseudo Genes (short protein)      :: 4 of 196
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890276.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="MINF_7C"
                     /isolate="MINF_7C"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="7"
                     /geo_loc_name="Australia"
                     /collection_date="2014-02"
     gene            712..1707
                     /locus_tag="JMW01_RS26405"
     CDS             712..1707
                     /locus_tag="JMW01_RS26405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_038989441.1"
                     /translation="MQNPKLKNLTDYSPDDKPWDVHKSQSDDVGGIYLRAAEFEAYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDARWMFLTLTVRNCAIEDLGDTLTAMNAAFQRMKVRKEFKSVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          complement(1428..1618)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.375"
                     /coverage="98.0"
                     /evalue="1.4200000000000001e-44"
ORIGIN
        1 agccctgccc tacaggtgat gccgtggggg tattttcgtt ttgctcggta tgccttattc
       61 gtttaaatcc gccatcagga gtatgcgggg taaagtcgtg cggccgcgat gaggaacggg
      121 gattgccccc gcagctctgc gaggaggcac acgccgttcg gaatcggggt ccactctgtt
      181 taatagtgga ctcttgttgc gatttgcaac ggaaacagcc gcgtgcagtg aatgtaatac
      241 tgcacgtttg tctcaatctg acatttctca ggggggcgat ttaacgtggt ttgcttaatt
      301 tttgagctta cgaatgcttg agtgtttgag tgcctgaatg ctgcttttgg gggttggttt
      361 ttcggccctg aaaggggcga aatccttgta tttatactta agggataact ctaggattca
      421 aattcgcttc cagcccttgt gccgcaaggc ctgagagcca atttgctcga aaatggtttt
      481 gtgagtatga tttctgacag gtgatcgtgt ccgcgaacta atttttgatt acttggggtg
      541 gttcccaaga ccttacttac tgacacgatg atatgagaaa cccctgcaag tgctaccaac
      601 acttcagggg cgcgatcacc tggctaaata cggtttgaaa tcgactcgca acaggtgata
      661 cggaaatgat aacacaccct tccagcgcct gcccatattg gagcaggtgc tatgcagaat
      721 cctaagctaa agaaccttac tgactacagt cccgacgata agccgtggga cgttcacaag
      781 tcgcaatctg atgatgttgg cggtatctat ctgcgtgcag ctgaatttga ggcgtatgcg
      841 gctcgtatgc gcgattgtgg cggcttgctg cgttttggct ggtctaccct taaagacacc
      901 ggagaaacgc gtttacggct tcgtgaggcg catttctgcc gcgttcgtca ctgccctgtc
      961 tgccagtgga ggcgttccct gatgtggcaa gcccgttttt atcagtctct gccgaaaatc
     1021 gtcgctgatt accctgatgc ccgctggatg ttcctcacgc tcaccgttcg caactgtgcg
     1081 atcgaggatc tcggggacac gcttactgcc atgaatgccg cattccagcg catgaaggtt
     1141 cgcaaggaat ttaaatccgt acagggatgg attcgcacca cagaagttac ccgcggtcgt
     1201 gatggctctg cacaccccca ctttcacacc ctgatgatgg ttcctcctgg gatgctgaac
     1261 ggtcatgact acgttaagca ctaccgctgg gttgaactct ggcgtgactg cctgcgcgtt
     1321 gattacgatc ctaatgttga tgttcgggca gtgaaacccc gcaagcctaa agatggccag
     1381 actctggcat gtgccactgc tgaactggtg cgcggtgccg ttgctgaaac cctgaaatat
     1441 tcgacaaagc cggctgatat ggttgccgac ccggactggt tcttagagct gacccggcag
     1501 acgcataaac gccgttttgt tgcgaccggt ggcgctctga aagacgttct gaaactggag
     1561 caggaaacgg atcaggacat ggtgatcggg gatgatattt ccgatggtga agacgatggt
     1621 tcacgcctcg cctttggctg ggattcgacg ccaagaaaat acgtccgttt gcctgaacgc
     1681 gataagttta aatcagatcc tgattagggt gtcggggcct gccctgacca ggttgttttt
     1741 ggatgccgct gcgtgtggcg gtactccaaa aacacatctt gtccggtaca cagatttcct
     1801 ttggcattcc ttcgggtttc cctgagattt ccactctgca tacatacacg catacacgaa
     1861 taatcaacgg cagaattcgg gcaggatatg taaagtggga ccactttacg cctgccttat
     1921 tcgcactctg ctcaatggaa tattaaatct gacagcgttc gccgccgtcg aatcgtcaac
     1981 ttctaaatcg ggggatccct ttagggttcc gatttagtgg ttgtacgact gcacccctca
     2041 tacccttgtg atgggtgatg gttcacatgg tgagccatcg ccctgtaaag ccgcttttta
     2101 cccccttcaa ggcgttgcct gtggggtagg tgcgta
//
