LOCUS       NZ_LR890239             3619 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF334 isolate INF334 plasmid 5,
            complete sequence.
ACCESSION   NZ_LR890239
VERSION     NZ_LR890239.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357214
            Assembly: GCF_904863075.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 16:21:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,407
            CDSs (total)                      :: 5,285
            Genes (coding)                    :: 5,174
            CDSs (with protein)               :: 5,174
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 51 of 111
            Pseudo Genes (incomplete)         :: 60 of 111
            Pseudo Genes (internal stop)      :: 23 of 111
            Pseudo Genes (multiple problems)  :: 22 of 111
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890239.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF334"
                     /isolate="INF334"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            complement(845..1246)
                     /locus_tag="JMV98_RS26945"
     CDS             complement(845..1246)
                     /locus_tag="JMV98_RS26945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_048270303.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKTGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNILLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1246..1437)
                     /locus_tag="JMV98_RS26950"
     CDS             complement(1246..1437)
                     /locus_tag="JMV98_RS26950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_049139654.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEELHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1852..1980
                     /locus_tag="JMV98_RS27230"
                     /pseudo=""
     CDS             1852..1980
                     /locus_tag="JMV98_RS27230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2209..2649
                     /locus_tag="JMV98_RS26960"
     CDS             2209..2649
                     /locus_tag="JMV98_RS26960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019704629.1"
                     /translation="MSKYLITFDLDTTKLKTLYHGKNYNNAYYDIRSTLSRRGFENIQG
                     SVYLGQEGISEAHGTIAIQELTAKYSWFYECVSNIKFYRIESDLNAQFIADGVNEARKR
                     FYTQLEDMRKSLLSVGLTVEQVNEIIGQQQFKLESTISPDKM"
                     /name="hypothetical protein"
     gene            2718..3020
                     /locus_tag="JMV98_RS26965"
     CDS             2718..3020
                     /locus_tag="JMV98_RS26965"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_128316336.1"
                     /translation="MKIGSTREYGATKSHLLLMITTLPAGVGVFIYPIAEAVWGELPLL
                     KVVGYTALSLMIGGVVGNIVVRGLFSTSLGILFINPLAMISSLTGIAFLIVQYLP"
                     /name="hypothetical protein"
     Typing          1559..1962
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.912"
                     /coverage="99.0"
                     /evalue="1.01e-158"
ORIGIN
        1 gttatataaa aattagcatc agagcaagtt ggaaggcact tttgagtact aacaaacact
       61 catctcactc cgctgtaggg accagtaacc ccaaccattc gatgtcattt aacataaggc
      121 cctgattgta cgcaccgcta aaacggcctc agggcgtttc tgacgggaaa ccggtaaaac
      181 aggcaacaaa ccacccgaaa acccgccaga aacgcgcagg ctctgttttt acggcatgca
      241 tgagtatgca cgcaagtgca tagcgcgaaa attcacgcca ttcagccagg gtaagtcctg
      301 tttcgggcgt acttcccatc cgaaaacggt gaacggggac gcaatttatt gcgtggccgt
      361 gaagcgttgc cggcgcagcc ggaaaaccgg ttttcagcac gttcaggaat ccggttcgtc
      421 gacggccggc aatcacgtta tggcaagtca ccgaacgact caccacacga ttcaccggca
      481 actcttcact agagtcgtac ccagagtcgc cacgcctaaa aaacaaccaa acggggagtc
      541 gggtctagag tcgggtcgtt attaactcat tgtttttata gtcctgagtc gttaccgact
      601 ctatgacgac tcgccgggga ctctatgacg agtcgtcata gagtcggatc tatataaatc
      661 aaatttaaaa aacaaaattt tacagactta aactactgat attaaataca aatccgcaaa
      721 attttaattt tgcgtagtgt gtgggtattt ttagtggtga ggagcgttca gaaatccggc
      781 gattttttgg aaggttcagg aactccccgg gatggccgga gaggaaaacg gaagcatgac
      841 ggggtcagga ttttttccag aatttccacc atggcgccgg ggattcagtt aattttgcct
      901 ggtgattttc aagaaggagc atggcctgtt tcaggctgtc aatgtgcgaa tccttggaca
      961 aaagtaagat attcaggtgt tcaatctcct gtttcagatg acgaatcacc tgttcactct
     1021 ggtcagcaga ggctgtatca cgctgttcag agacctgtcc agaatggtgt tcacccttcg
     1081 gttgctcaaa gggaccaaag acacgtaaaa gctctgaagt atctaccatt tttgcattgc
     1141 gctcaccact acaggtggac aggtcacctg ttttaattaa cctgtgcagt gttgtcctac
     1201 tcttgcccgt cagtcgggca gcctcactaa tagacactct ggccatcagt taccatcctg
     1261 taatgcatcc agtctcgagg acagtgtacg gaaaagatgc tccgcatcat cgtggagttc
     1321 ctcacaaagg tcggcctcga catcgagatc aagctcgtta agcttctcca gcaggagcag
     1381 agactgattc tggatgaatt tagccatgtt cagcgctgtt ttctgttgtt tcgtcataag
     1441 aggcctcaga gcgtcagtgc tcagtgtagg gatgttctct tttccgcttc ctcgctcact
     1501 cagtcgctac gctccggtcg ttcggctgcg gcgagcggca ggagcatgcg tataagagct
     1561 cgagaaaacc gagaggtcaa ggtaggggaa aacgggaggc cgcagcgcgg ccgtttttcc
     1621 ataggctccg cccccctgac aagcatcaca gaatttgacg ctcaaatcag tggtggcgaa
     1681 acccgacagg actataaaga taccaggcgt ttccccctga tggctccctc gtgcgctctc
     1741 ctgttcctgc cattcggttt accggtgtca ttccgctgtt atggccgcgt ttgtctcatt
     1801 ccacgcctga cactcagttc cgggtaggca gttcgctcca agctggactg tatgcacgaa
     1861 ccccccgttc agtccgactg ctgcgcctaa tccggtaact atcgtcttga gtccaatccg
     1921 gaaagacgcg acttatcgcc actggcagca gccattggta acagaaccag gtggatttag
     1981 atattaagag tcttgaagtg atggccctac tgcggctaca ctggaaggac agtatttggt
     2041 atctgtgctc caccaagcca gttacccggt taagcagttc cccaactgac ttaacctttg
     2101 aaaaaaccgc ctccccaggc ggtttttttc gtttaacgtc ggtaagatac gctttagggt
     2161 tccagctagt caagctggct actaaaagtt aataagcgca ggaaaaatat gagcaaatac
     2221 ctgattacat ttgaccttga tacaacaaag ttaaaaacct tgtatcacgg caagaactac
     2281 aataatgctt attacgatat tcgaagcacg ttgagccgac gcggctttga aaacatacaa
     2341 ggtagcgttt atttaggtca ggaaggtata agtgaggctc acggaaccat tgcaattcaa
     2401 gagctaacag ctaaatacag ctggttctat gaatgcgtat ctaacataaa attctatcgt
     2461 atagaatctg atttaaacgc acagtttatc gctgatggcg ttaacgaagc gagaaaaaga
     2521 ttctataccc aacttgaaga tatgcgcaaa agtttactat ccgttggttt aacagtagaa
     2581 caagtaaacg aaataatagg tcagcaacaa ttcaaattag aaagcacgat aagccctgat
     2641 aaaatgtgag cataagtaaa atggtttttc ttcttataat gacgctatgg tgggcatcct
     2701 cattcatcac tcatctaatg aagattggta gcaccagaga gtacggtgca actaaatctc
     2761 atttactttt gatgatcacc acacttcccg ctggagttgg cgtctttatc tacccaatag
     2821 cagaagctgt atggggtgag ctaccgttac tgaaagttgt aggctatacc gccttatccc
     2881 tcatgatagg aggggttgtt ggcaacatag ttgttcgtgg attattttca acttcgctgg
     2941 gtattttgtt tataaacccc ctagcaatga tctccagtct tacaggtata gcattcttaa
     3001 tcgtgcaata cttaccataa cattaacccc aacgcgcatg aaaggcccgc actgcgggct
     3061 tttttttaga agagatgtgc cttcgtttca acttagcttc aatagaggca ccggcaacat
     3121 acaaaatatc cgtattttaa tactagccac cgagcggttt cctacgcatc gcgatcaaaa
     3181 atgcacgagc aatctgatcg ggcataaaat ttcagcaacc cactaaactc acccaaggaa
     3241 gagtaaacat aatctattga taaaaaataa ttttatattt ttagaaaagt actgaatgtt
     3301 ctttcgcggc aaacggttca ataaaaatga gcatcagagc aagttggaag gcacttttga
     3361 gtacttgata ggagacttta aaatgataat tacaattgag ttaaaagggg cattgatggc
     3421 caaaaatcac tcagagtata aggttttgtt tgagggtaaa tatctcgcgg taatatggat
     3481 actatagatt cgtcggcgaa cgtcggcgaa cgtcggcgaa cgtcggcgaa cgtcggaata
     3541 agatcaatta aatattacat caagataaaa acaataaaaa attaaaaaat aagtactgaa
     3601 tgttctttcg cggcaaacg
//
