LOCUS       NZ_LR890238             3712 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF334 isolate INF334 plasmid 4,
            complete sequence.
ACCESSION   NZ_LR890238
VERSION     NZ_LR890238.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357214
            Assembly: GCF_904863075.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 16:21:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,407
            CDSs (total)                      :: 5,285
            Genes (coding)                    :: 5,174
            CDSs (with protein)               :: 5,174
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 51 of 111
            Pseudo Genes (incomplete)         :: 60 of 111
            Pseudo Genes (internal stop)      :: 23 of 111
            Pseudo Genes (multiple problems)  :: 22 of 111
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890238.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3712
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF334"
                     /isolate="INF334"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="4"
                     /geo_loc_name="Australia"
                     /collection_date="2014-03"
     gene            complement(join(3461..3712,1..603))
                     /locus_tag="JMV98_RS26925"
     CDS             complement(join(3461..3712,1..603))
                     /locus_tag="JMV98_RS26925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004728943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_196535460.1"
                     /translation="MEEKIEVCTSRNIPRPIQREIRTRCGFGCVICGMPLYEYEHMEEW
                     ALVHRHVAEEITLLCNQHHREKTNGLLPKEMVREANANPFNLRNGVSKPYDLHFSGVNA
                     EVVIGGNKFTCKDQGYGTAMVPLSIDGVPIIGLVLTDGHILLNVVAFDEFNKPILHIKN
                     NQLFYSTDIWDISLVGRKLTIREGDRRFLLEIEFSPPNKVTITRGRFLKNGIEVIIRPE
                     NILITNNSIFLSGNEAHNCYGGLILGHHENQVSGFMAIDLIPRYLGCNKEALKFERECK
                     KAQ"
                     /name="hypothetical protein"
     gene            complement(615..1046)
                     /locus_tag="JMV98_RS26930"
     CDS             complement(615..1046)
                     /locus_tag="JMV98_RS26930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001233485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_199940450.1"
                     /translation="MRRVTQIDLETGEDLGGFVAVIRPKRKSSFQRHFTMNQAALLTIA
                     NELNHDQMRVLMALLADLDYENYIQVAQIDIAEALNMQKTHVSRAVKNLLEFGIVIEGP
                     KIGRSKTYRLNPQFGWKGTVTNHKKALKNGLTVINGGRS"
                     /name="replication/maintenance protein RepL"
     gene            1580..1876
                     /locus_tag="JMV98_RS26935"
     CDS             1580..1876
                     /locus_tag="JMV98_RS26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_199940452.1"
                     /translation="MSRENMLRVRFSDDEYDRLKSLADEAGISMSQLVRDHLGKVRVRN
                     REDEKERVAMLNRINANLNMIARWVNTHKDSADSIEVVSHLMVIERHIAELSK"
                     /name="hypothetical protein"
     gene            2089..3540
                     /locus_tag="JMV98_RS27295"
     CDS             2089..3540
                     /locus_tag="JMV98_RS27295"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_264920983.1"
                     /translation="MEQAIIDRFEAVAFAGLESDQYNILWVRHEHANHHELHFVTPRVE
                     LSSGKSLNIRPPGELAKQTFDDFRSEVNARYGFADPDDPKRAREINQPNHLLKIAAESL
                     RNGDKPEDDVRLLVNEIIAERAIEGLISNRADVISHVKELGFDVAREGKNYITIMEPES
                     GERWRLKGGLYEREFDATREIEAKAQRTAREYGKPDAGAADHFAQRVEGHISSRAQYNQ
                     NRYAPAIAGLSIGNRTNEESNALENNQRSGPIPSTERTDSLADYLSSRLGVSALADKPV
                     NRQSTADSITGTDLKGHGKSDIWDRYPESFERYVRCTSGRELGSNGLDSRKSSSNQSHE
                     VNDDRARKPLAERITGFISTIQSATREFKERVEYLTSHVRAHFEGKRDIVQASRELAES
                     NDRIKQASDSIREPVQSEQRVRNELDHYQYLMNKRKNKAEIAPKKIRANYVNVDRLIKF
                     TGLSYTLFQTLKLLCCNLSILVLNL"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
ORIGIN
        1 atttggaggt gaaaattcta tttctaataa aaaccttcta tccccttcac ggatagttaa
       61 tttcctacct accaaactaa tatcccatat atctgttgag taaaataact ggttgttttt
      121 tatatgtaat attggcttat tgaattcatc aaatgctact acattcaaaa gaatatgccc
      181 atcggtaagg actaatccaa tgataggaac tccatcaatg ctcaatggaa ccatagctgt
      241 tccatatccc tgatccttac atgtaaattt attgccacct ataacgactt ctgcattaac
      301 gccggagaag tgaaggtcat aaggctttga gaccccattt cttaagttaa aaggatttgc
      361 attagcctct cttaccattt cttttggaag taatccgttt gttttttctc tatggtgctg
      421 gttacataaa agtgtgattt cttccgctac atgcctatga actaatgccc actcctccat
      481 atgttcatat tcataaagag gcatgccaca aattacgcac ccaaaaccac atcttgtacg
      541 tatctcacgt tgaataggcc tcgggatatt gcggcttgta caaacttcta ttttttcttc
      601 cactaaacca cctcttaaga tctgccgccg ttaatgactg ttaatccgtt ttttagagct
      661 ttcttgtgat tggtaactgt tcctttccaa ccgaattgag gatttagacg ataagtctta
      721 ctacgaccaa ttttaggccc ctcaataaca ataccgaact caagcaaatt ttttactgca
      781 cgactaacat gcgtcttttg catgttcaga gcttccgcaa tatctatctg agctacttga
      841 atgtagtttt cgtaatccaa gtcagctaat agagccatca agacacgcat ttgatcatga
      901 ttcaactcat tagcaatagt taataaggct gcttgattca tagtaaaatg cctctgaaat
      961 gatgattttc ttttaggcct gatgacagca acaaaaccac ctaggtcttc ccctgtttct
     1021 aaatctatct gcgtgactct tcgcatctga attcgtcctg atagttacca tgtgaggtaa
     1081 caaagttacc atgtgaggta actattttca attcaatccc gcttgtatca agccttacag
     1141 aagggtccct tctgtatctt attactcaac cactgcaaaa aggctggttt ttgagggcct
     1201 aacgcctcgc ttcgctcgtt gttcaacccc tcaaaatgtc caactggcta tgccagttgg
     1261 acaatttttc ggcgttctta attttatcga atcgtcagtt ctatttaaga gtttaaatcg
     1321 tccatcggta aatcgtgggg gcccctttgg ggttccgatt tagtgattga cgactctccc
     1381 tataaataac ctttctgagg tgattggttt cacgaagtga ggccaatcac ctacaaagcc
     1441 ggtgttgatt ttggaggggt caaggggagg cgaagccacc cattgcaagg cccgatgttg
     1501 tctcaaattg cgttagcaat ttgtagcaac actgggtagc cttgtttata tcgtgccttc
     1561 tgtgattttg aggtgtgttt tgagtcgtga aaatatgttg agggttcgtt tttctgatga
     1621 tgaatacgac cgattaaagt ctcttgcgga tgaggctggg atctccatgt cgcagttggt
     1681 tcgtgatcat cttggtaaag tcagagtgcg taatcgagaa gatgagaagg agcgtgtggc
     1741 catgcttaac agaatcaatg cgaacctgaa tatgattgct cgctgggtga atactcataa
     1801 agattctgcc gactctatcg aagttgtatc tcacttaatg gtgatcgaga ggcatattgc
     1861 ggagctttcg aaatgattgt cgggtttagt tcacgaggaa ctggcggcgg atctggccct
     1921 gtagagtacc ttacggacaa aaatcgacaa ggacgtaatg agaatccgcc aagtgtctta
     1981 cgtgggtcgc caaaggcaac ggagcagctt atcgactcac tcgatttcaa gcataaatat
     2041 acctctggcg tgttgtcttt cgcgccgaat gagaaggtca ctaaggagat ggaacaagcc
     2101 ataatagacc gctttgaggc tgttgcgttc gctggtttgg agagcgatca gtacaacatt
     2161 ctctgggttc gccacgaaca cgctaatcat catgagctgc atttcgtgac acctcgcgtt
     2221 gaactttcat ctggcaaaag cctgaatatt cgccctcctg gtgaactggc aaaacagacg
     2281 ttcgatgatt tccgtagcga agttaacgca cggtatgggt ttgctgaccc tgacgaccca
     2341 aaacgcgccc gtgaaataaa ccaacccaat cacctactca aaatcgccgc agaatcgctt
     2401 agaaacggcg ataagccaga agacgatgta agacttcttg taaacgagat aatcgctgag
     2461 agagcgattg aggggcttat atcgaatcga gcggatgtta tcagtcatgt caaagagctg
     2521 ggttttgatg tggcgagaga aggcaaaaat tacataacga ttatggagcc tgagtcaggc
     2581 gaaagatggc gactcaaagg aggactgtat gagcgtgaat ttgacgctac aagagagatt
     2641 gaagcaaaag cacaaagaac agcaagagag tatggaaagc ctgacgcagg agcagctgac
     2701 cactttgcgc aaagagttga gggacatatt tcaagtcgag ctcaatacaa tcaaaaccga
     2761 tatgcgcctg caattgcagg acttagcatt ggaaatcgaa caaacgaaga atcaaacgct
     2821 ctggaaaata accaaaggtc gggtcctata cccagcactg agcgcactga cagtcttgct
     2881 gactatttgt ctagccggct cggggtatct gcattggcag ataagccagt taaccgacaa
     2941 tcaacagcag atagcattac aggaacagac cttaaaggac atggaaaatc ggacatctgg
     3001 gatagatatc cagaatcttt cgaacggtac gttcgttgta cttccggaag ggagctcggg
     3061 agcaacgggc tggacagtag gaagtcgtca agcaatcaaa gtcacgaggt aaatgatgac
     3121 cgagctagaa aaccacttgc tgaacgcatt acgggattta tcagcacaat tcaaagcgca
     3181 acacgagagt tcaaagagcg cgttgaatac cttacaagcc atgtacgagc gcactttgaa
     3241 ggaaaacgcg atattgtcca ggcaagtcga gagcttgcag aatcaaacga ccgaattaaa
     3301 caggcaagtg actcaattcg tgagcctgta caatcagaac agagggtaag gaatgaatta
     3361 gatcactatc aatatttaat gaataagaga aaaaataagg ctgaaatagc cccgaaaaaa
     3421 atcagggcca actatgtcaa tgtagatagg ctcataaaat ttactgggct ttcttacact
     3481 ctctttcaaa ctttaaagct tctttgttgc aacctaagta tcttggtatt aaatctatag
     3541 ccataaagcc agaaacttgg ttttcatggt gacctaatat caagccgccg tagcaattgt
     3601 gggcttcatt accactgagg aatatactgt tattagttat taaaatattt tctggcctta
     3661 taataacctc aatgccattt ttcaaaaaac gtcctctagt aatggttact tt
//
