LOCUS       NZ_LR890234             1916 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Klebsiella pneumoniae isolate KSB1_6J plasmid 5, complete sequence.
ACCESSION   NZ_LR890234
VERSION     NZ_LR890234.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06112204
            Assembly: GCF_904863225.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 11:10:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,335
            CDSs (total)                      :: 5,219
            Genes (coding)                    :: 5,083
            CDSs (with protein)               :: 5,083
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 58 of 136
            Pseudo Genes (incomplete)         :: 84 of 136
            Pseudo Genes (internal stop)      :: 21 of 136
            Pseudo Genes (multiple problems)  :: 24 of 136
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890234.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="KSB1_6J"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="5"
                     /geo_loc_name="Australia: Melbourne"
                     /lat_lon="37.8457 S 144.9821 E"
                     /collection_date="2014"
                     /collected_by="University of Melbourne"
     gene            638..874
                     /locus_tag="JMW15_RS26505"
     CDS             638..874
                     /locus_tag="JMW15_RS26505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1133..1435)
                     /locus_tag="JMW15_RS26510"
     CDS             complement(1133..1435)
                     /locus_tag="JMW15_RS26510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     Typing          300..473
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(2..321)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.547"
                     /coverage="81.0"
                     /evalue="7.36e-127"
     Typing          complement(1747..1916)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.567"
                     /coverage="90.0"
                     /evalue="1.54e-65"
ORIGIN
        1 cgcggccata acagcggaat gacaccggta aaccgaaagg caggaatgcg ggggagcacg
       61 agggagccac cagggggaaa cgcctggtat ctttaagccg catcgggttt cgccaccact
      121 gatttgagcg tcagatttca tgatgtttgt caggggggcg gagcctatgg aaaaacggct
      181 tcgccgcggc cttatctctt ccctgttaag ctccttcctg gtatctccca ggaaatttcc
      241 gccccgcctg taagccggca ccgctcgccg cagccgaacg accgagcgca gcgagtcagt
      301 gagcgaggaa gcggaatata tcctgtacta catatcctgc tgacgcgctg gtgccgcctt
      361 ttttctcctg ctacatgaag cacttcactg atttccacat ccgtgccaac atagtcagcc
      421 agtatacact ccgctagcgc tacgtgactg gttcagggct gcgccccgaa acccgctaaa
      481 agctaatgac gcgcctgcgg cttgtccaac gcctcacggc accggattaa aatccgctcc
      541 cgttcaccgt ttctgactgc ctttcaccgt cgctggcgct tcatcgtttc tactgtgtct
      601 ggcagactgt gctgatttat tctgactgga gaacgttatg gccagactga caaacttgac
      661 gcctgcagag aaaaaatttc ttgatgatgc tgttgccgca gctgaaagag cgtcaggtaa
      721 aaagctaaat cagcctaacc ggcacatcgt cctgaacaga gcgcgtgcgc aaattgagtt
      781 gcagcgttac gccgaccgcc agcgtgcatt acgtgaggat gagcggcagc agtccgattt
      841 tgcctggtca cgtccgcgcg cgccgcgccg ctgattttgg cttttggcgg tttagtggtg
      901 ctgacgctgc gaaatcacct gccattcacc tgcgtgcata gccatgcagt cgcgcagaaa
      961 tcatcagggg cgtttttccg ggatactggt gaggaaaggt gctggaaacg gccctgatgc
     1021 agcaggattg cgctgagggc gcctgcgggg gtgcgggcaa gggatgttat gtttaatcgg
     1081 tctgaccgtc aggtacaaaa aaagccctta gggggctttt ttttgctatg agttagccat
     1141 attttcgtgc gaatttttca tcggaatcgc atagataaat aataaactca ataaacgcga
     1201 tgatcgcggg tatgaatgtc cagcaaaaaa ttagatacag gaacccctgt cctatttttc
     1261 ctaagtaaaa tttatgtgcg ccaaatccac caaggaagaa tgctaatagc gcggctgcga
     1321 ttctactttt ttcacctgaa cctgaagagg cgtttgtggc tccgcagtgc gggcatgact
     1381 ttgctgtttc gtgtatttcc ttgccacatc ctcggcagta aaccattgaa ctcatttttt
     1441 atcctcgagc ttattttaat tgggatcata atatccgatg ttttataacg atgtgtatcc
     1501 tatgtgctcg gattggatag atttccatta cggtgaagga tcttcttgag atcctttctg
     1561 tggcgtcgta atctcttgct ctgtaaacga aaaaaccgcc ctgcaaggcg gtttttcgaa
     1621 ggttctcaga gcagcaactc tttgaaccgt ggtaactggc ttacgaggag cgcagtaacc
     1681 aaatctgttc tttcagttta gccttaacag gcgcataact tcaagactaa ctcctctaaa
     1741 tcagttacca gtggctgctg ccagtggcga taagtcgtgt ctttccgggt tggactcaag
     1801 atgatagtta ccggataagg cgcagcagtc ggactgaacg gggggttcgt gcatacagtc
     1861 catccaggag cgaactgcct tcgcggaact gagtgtcagg cgtggaatga gataaa
//
