LOCUS       NZ_LR890214             2988 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Klebsiella pneumoniae isolate INF022-sc-2279895 plasmid 6, complete
            sequence.
ACCESSION   NZ_LR890214
VERSION     NZ_LR890214.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3356968
            Assembly: GCF_904863055.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 11:19:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,516
            CDSs (total)                      :: 5,391
            Genes (coding)                    :: 5,167
            CDSs (with protein)               :: 5,167
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 224
            CDSs (without protein)            :: 224
            Pseudo Genes (ambiguous residues) :: 0 of 224
            Pseudo Genes (frameshifted)       :: 69 of 224
            Pseudo Genes (incomplete)         :: 154 of 224
            Pseudo Genes (internal stop)      :: 40 of 224
            Pseudo Genes (multiple problems)  :: 31 of 224
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890214.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="INF022-sc-2279895"
                     /db_xref="taxon:573"
                     /plasmid="6"
     gene            224..415
                     /locus_tag="JMW18_RS27360"
     CDS             224..415
                     /locus_tag="JMW18_RS27360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000166328.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            415..816
                     /locus_tag="JMW18_RS27365"
     CDS             415..816
                     /locus_tag="JMW18_RS27365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_181469691.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKSGELSTCSGERNAKMLDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTSSSDQSEQVIRHLKQEIEYLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1592..2458)
                     /locus_tag="JMW18_RS27370"
     CDS             complement(1592..2458)
                     /locus_tag="JMW18_RS27370"
                     /inference="COORDINATES: protein motif:HMM:NF021640.3"
                     /GO_function="GO:0061810 - NAD glycohydrolase activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="WP_201519587.1"
                     /translation="MSENKEKKRIFIGSSSESKRIADAVYSYFEYKHDTRIWSAVFDAS
                     TVTINEIIKQANENDFAIMILGEDDILSSRGETYSSARDNVILELGIFIGSLGLSNCFI
                     VIPSSSEHKIKIASDLSGVTLLKYNSAKENPSESVLTACGEIERKIAASPKKNAPREVE
                     KEIKINELNDFNDIRHELISNRFELDLARKESESLSSSIRNAFFSIVKPATKHEIDKWI
                     QGAKSNSGFSGDIRHYNIFYTDKEVIVPQLYGADSIGLIVESGTKIYQSGNSHNTIYYM
                     DGFRCNR"
                     /name="TIR domain-containing protein"
     gene            complement(2684..2797)
                     /locus_tag="JMW18_RS27660"
                     /pseudo=""
     CDS             complement(2684..2797)
                     /locus_tag="JMW18_RS27660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          complement(2681..2988)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.968"
                     /coverage="85.0"
                     /evalue="1.13e-113"
ORIGIN
        1 tgtcagattt tgtgatgctt gtcagggggg cggagcctat ggaaaacggc aagtccgcgg
       61 tttttcactt ctgcctctgg ttatctatgt tgtcgtctca cgcccttccc cgtgagttat
      121 cgccgctcgc cgcagccgaa cggctggagc gtagcgactg agtgagcgag gaagcggaaa
      181 agagaacatc cctacactga gcactgacgc tctgaggcct cttatgacga aacaacagaa
      241 aacagcgctg aacatggcta aattcatcca gaatcagtct ctgctcctgc tggagaagct
      301 taacgagctt gatcttgatg ctgaggccga cctttgtgag aaactccacg atgatgcgga
      361 gcatcttttc cgtacactgt cctcgagact ggatgcatta caggatggta actgatggcc
      421 agagtgtcta ttagtgaggc tgcccgactg acgggtaaga gtagaacaac actgcacagg
      481 ttaattaaat caggtgaact gtccacctgt agcggtgaac gaaatgcaaa aatgttagat
      541 acttcagagc ttttacgtgt ctttggtccc tttgaacaac tgaagggtga acaccattca
      601 ggacaggtct ctgaacagcg tgatacatct tcttctgatc agagtgaaca ggtgattcgt
      661 catctgaaac aggagattga atacctgaac accttacttt tgtccaagga ttcgcacatt
      721 gacagcctga aacaggccat gctccttctt gaaaatcacc aggcaaaatt aacggaatcc
      781 ccggcgccat ggtggaaatt ctggaaaaaa tcctgatcct gccatgcttg acttttcctc
      841 tccggccatc ccggggagtt cctgaacctt cccaaaaatc gccagatctc tgaacgctcc
      901 tcaccactaa aaatacccac accccacgca aaattaaaat tttgaagata actcattaat
      961 atcagttagt tgtgggttat tacattacgc agtattactt tctgtaaggt gaatccaagt
     1021 cgtcggcgat tcgtgtacga cttgccgacg actcgtcata gagtcatcga cgactcactt
     1081 aagactatca gtaacttatg acgacttgac tctagagtcg aatcgtcatt ttggtgtttt
     1141 tttgaccttg acgactctag agtcaagtca cgagtcgaat cgccggtgaa tcgtgtagtg
     1201 agtcgtccgg cgacttgcca taacgtgatt gccggccgtc gacgaacccg attcctgatc
     1261 gtgctgaaaa ccggttttcc ggctgcgccg gcaacgcttc acggccacgc aataaattgc
     1321 gtccccgttc accgttttcg gataggaaga acgccggaaa caggacttcc cctggctgaa
     1381 tggtgtcaat ttccgcgcta tgcacttgcg cgcatactca tgcatgccgt aaaaacagag
     1441 cctgcgcgtt tctggcgggt tttcgggtgg tttgttgcct gttttaccgg tttcccgtca
     1501 gaaacgccct gaggccgttt tcgcggtgcg cgtaatgaca cgttatggta aattcaatac
     1561 gtctacttta gttaccaatt tttaatatga attaacggtt acatctaaaa ccatccatat
     1621 aatagattgt attgtggcta tttcctgatt gatatatttt cgttccagat tcaacaatca
     1681 atccaattga gtcagcaccg tatagttgag ggacaattac ttccttgtca gtgtaaaaaa
     1741 tattatagtg tctaatgtca ccactgaatc cagaattgga tttagcacct tgaatccatt
     1801 tgtcaatttc atgtttagtg gcaggtttta ctatggaaaa aaatgcattt cttatagagc
     1861 tacttaaact ttctgattcc tttcttgcca gatctaattc aaatctattt gaaatgagct
     1921 cgtgtctaat atcattgaaa tcatttaatt cattgatttt tatttctttt tccacttctc
     1981 gaggagcatt ttttttcggt gaggcagcta tttttctttc aatttctccg catgcagtta
     2041 gtacagattc tgaggggttt tcttttgctg agttgtattt tagaagcgtt actcctgata
     2101 gatctgaagc gattttaatt ttgtgctctg aacttgatgg tataacgata aagcaattgc
     2161 ttaaacccaa ggaaccaatg aatataccta gctctaaaat cacattgtct ctagctgaac
     2221 tataagtttc tcctcttgag gataaaatgt catcctcgcc aagaatcatt atagcaaaat
     2281 cattttcatt agcttgtttt attatttcat ttattgtcac agtagatgca tcaaatacag
     2341 cactccatat tctagtgtca tgtttgtatt caaagtatga gtacacagca tctgctattc
     2401 tcttggattc ggatgaagaa ccaataaata ttcttttttt ttctttattt tcgctcactt
     2461 attatatcct ctttcttttt ctatgattga cgtttcaggg tattggggcg tatcttacag
     2521 ctctgaaacg aaaaaaccgc ccgaaggcgg ttttttcgaa ggttagatca tcctgcaaga
     2581 ttttctaacc caaggtaact ggcttggagg agcacagtaa ccaaaactgt tcgtttagtt
     2641 tatccttaac tggcgtataa cttcaagact ctcctcctct aaatcagtta ccaatggcta
     2701 ccgccactgg cgataagtcg tgtctgtaag ggttggactc aagttgctag ttaccttaca
     2761 tggcgtggta gtcggactga acggggggtt cgtgcataca gtccagcttg gagcgaactg
     2821 cctacccgga actgagtgtc aggcgtggaa tgagacaaac gcggccataa cagcggaatg
     2881 acaccggtaa accgaatggc aggaacagga gagcgcacga gggagccatc agggggaaac
     2941 gcctggtatc tttatagtcc tgtcgggttt cgccaccact gatttgag
//
