LOCUS       NZ_LR890197             3223 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF133 isolate INF133 plasmid 9,
            complete sequence.
ACCESSION   NZ_LR890197
VERSION     NZ_LR890197.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357033
            Assembly: GCF_904863195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,716
            CDSs (total)                      :: 5,598
            Genes (coding)                    :: 5,449
            CDSs (with protein)               :: 5,449
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 57 of 149
            Pseudo Genes (incomplete)         :: 96 of 149
            Pseudo Genes (internal stop)      :: 23 of 149
            Pseudo Genes (multiple problems)  :: 24 of 149
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890197.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF133"
                     /isolate="INF133"
                     /isolation_source="wound swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="9"
                     /geo_loc_name="Australia"
                     /collection_date="2013-07"
     gene            complement(441..773)
                     /locus_tag="JMX29_RS28440"
     CDS             complement(441..773)
                     /locus_tag="JMX29_RS28440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(941..1156)
                     /locus_tag="JMX29_RS28445"
     CDS             complement(941..1156)
                     /locus_tag="JMX29_RS28445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1160..1645)
                     /locus_tag="JMX29_RS28450"
     CDS             complement(1160..1645)
                     /locus_tag="JMX29_RS28450"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1680..2114)
                     /locus_tag="JMX29_RS28865"
                     /pseudo=""
     CDS             complement(<1680..2114)
                     /locus_tag="JMX29_RS28865"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2323..2646)
                     /locus_tag="JMX29_RS28460"
     CDS             complement(2323..2646)
                     /locus_tag="JMX29_RS28460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(442..773)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2743..2934)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          63..232
                     /name="rep_cluster_2405"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.17e-84"
     Typing          2914..3223
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.281"
                     /coverage="92.0"
                     /evalue="1.88e-72"
     Typing          complement(844..2333)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtttctcatt ccacgcctga aactcggttc cgggtaggca gttcgctcca ggatggactg
       61 tatgcacgaa ccccccgttc agtccgacta ccacgcccgt tccggtaact atcaacttga
      121 gtccaacccg gaaagacacg acaaatcgcc agtggcggta gccattggta actgggttca
      181 cggagcagag attgtagaga atgcctacag agttcttgaa gtgaaagcct gagtgcggct
      241 acactgaaag gacagtttag gtatctgcgc tccgtgaaag ccagttacca tcggaacaaa
      301 gagttggtag ctctgaattc cggcaaacga accaccgttg gtagcggtgg tttttttgtt
      361 tacagggaaa aagattacgc gcagaaagaa aggatctcaa ggaaatcctt ttgctttggc
      421 caatatgctt cggtaaaaag ttaatgcgca gaagattttg aaaaaatatt aataaccaaa
      481 actccaacgc aaataaggaa cattcctgca attgcgggcc aatcaagttt ttgaccgcta
      541 accaaccaac cagctaggct tattagtaca attcccgcac cagaccaaat tgcgtaagca
      601 ataccggtag gtatattttc caatgtttgg gaaagcagat aaaaggcagc gcaataactt
      661 attgcagttc ctacagacgg ccacaggcgt gtaaatcctt ctgaatattt cataaaggtg
      721 gtgcctatga cttcagccac aatagcccct cccaggaaaa tatatgtatt cataaaaata
      781 cctcatgttg aaaaatttaa atatctttac ataacaacta attaatagaa cccggcttat
      841 catagcgaag gaccatgatg ctgccactgc gatcgttcca gctccagcgc tttctggtgc
      901 tgcaccgccc gctcctgctg ccggtgagtt tctatcgcgt tcagcctttc gacaaccggc
      961 gcagctgctc gctcaaactc tgcacctgcc tgctcaagac cgtgacgcgc tcgttcagcg
     1021 ccgcgttctc ccgttgaata agaccagaca tcgtccgcca ttccgcgaag gcgttctccc
     1081 actcgtccag ccttttcgag tagtcctgct gtagctgctc taatgcgctc agcaactgtt
     1141 tttccagctc cgtcatgtgc tatttccccg ccagtatcat ccagctcgag tcctctccga
     1201 actgtcccgc ttccgggttc accctcacgc agcggcgtct ctgctcgccg caggtcgaga
     1261 gctgtacgcc gctgttcctc tctgacagca tggcctgcgt gctcttctgc tcccggatgg
     1321 tcgtatagtt ctcgagtatc tgctgcccct gccaccacag aatgcccgcg ctcgacgcta
     1381 tcagcagcgc ggagaccaga acgatggtca gccacgtctg gctgaccatg cgcagcatcc
     1441 ctttcgtgcg ctggctcatg gctgaggaca gcttccggtc gtggtcgagg atggcggcgc
     1501 tgattctctt ctcgctttcg ctcagttccg ctctgacaga cttctcgtgc tcgctgaatg
     1561 cggctttcag catctcgccg gtagtctgct gctgcgcttt cgatttctgc tctaagtcct
     1621 tcgccagcgt taaaagactg ttcatagatg gctcccttca gtcggatgtt tcgccccccg
     1681 tccgggtcgg caatgctgat gctgcttttt gtggtgcgca ccacctcaaa acctgcgctt
     1741 tccagcgcct cagtgacgtc ctgacgcgtt ttcagctccc cggatgaggc aagggcaagc
     1801 aggccgctcg taatcgcctg ggcggcttcc tgcttcgctt ccggcagcgc ggaaggcgag
     1861 accagcaccc gccggttctc cggcgcgttc gggtcatgca gccccagcct gccgttcact
     1921 atggtctgcc aggcatcgat gcgcggacgg tcggcgcggt cgtaatacgg ctgtagccgc
     1981 ttgccggtca gaagctccgt gttcgggatc aggaagttca gctccagccg ccccttgtcc
     2041 cggtgctcaa cccacagcac gctgtactgg tctttatcga gtccgggcat cagaacccgc
     2101 tcgaaactcg ccatcagctt ttcgcgctgg ccgggcggta aatcctgttc ggcaaaagac
     2161 agaacgccgg aagtgtactt tttggcgtag ggcgaggcgt cgataagctc ccggacttca
     2221 tccggcttcc cctgcagaac gctggcgccg tcgcgctggc gatctttacc cagcagataa
     2281 tcgaccggcc cgccgccgcc gccgcgcccc cgaggatgaa acttaacgat catcatcagc
     2341 acccttttcc agtacggcat gccgcaaccg ctcgagtccg gcatcgatgg ccatcagcgc
     2401 ggcgacaatc tgcacgcggt cgtgtccgct tccaccaccg gcgttaacct ggcgggcaat
     2461 ctggttaagg ttgttcccca tgccggcaag ctgacgaagc agcgccggcg agatcgacgg
     2521 aagtttgccg gcgcgtgcgg gcttctcgtc caggcacgtc tgccgcatcc aggccgcgag
     2581 ttgcttaccc tcgcagcgct ccagcagacg ccggtgctcg tcctcagtca cccacatggt
     2641 gagcattttg ctgcgtttgt ctgccaatcc ggcctcctga taacgccggg acggacggga
     2701 aatcttttcc cggtcggcac ggtgttggac aagccgcagg cgcggcagtg gttttagcgg
     2761 gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgtata ctggctaaac
     2821 atgttatgac ggagtggcaa tttatgaaag tgcttcatgt gacaggggaa aaatgcggct
     2881 gccgggcgta agtgcaaaat gcaggtggtg atgaaatgac gcctcctcgc tcactcggtc
     2941 gctacgctcc tgccgtgaga ctgcggcggg cgttaccagc tcacagatta cgggataagc
     3001 aaatgccgct cgaagcagga aaggccaaga aaaggatgcg gagttgccgt ttttccatag
     3061 gctccgcccc cctgacgagt atcacgaaaa tgacgctcaa atcagcggtg gcgaaacccg
     3121 atgcggctta aagataccag gcgtttcccc ctggtggctc cctcgtgctc ccccgcattc
     3181 ctgcctttcg gtttaccggt gtcattccgc tgttatggcc gcg
//
