LOCUS       NZ_LR890195             3619 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF133 isolate INF133 plasmid 7,
            complete sequence.
ACCESSION   NZ_LR890195
VERSION     NZ_LR890195.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357033
            Assembly: GCF_904863195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,716
            CDSs (total)                      :: 5,598
            Genes (coding)                    :: 5,449
            CDSs (with protein)               :: 5,449
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 57 of 149
            Pseudo Genes (incomplete)         :: 96 of 149
            Pseudo Genes (internal stop)      :: 23 of 149
            Pseudo Genes (multiple problems)  :: 24 of 149
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890195.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF133"
                     /isolate="INF133"
                     /isolation_source="wound swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="7"
                     /geo_loc_name="Australia"
                     /collection_date="2013-07"
     gene            complement(1222..1524)
                     /locus_tag="JMX29_RS28405"
     CDS             complement(1222..1524)
                     /locus_tag="JMX29_RS28405"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_128316336.1"
                     /translation="MKIGSTREYGATKSHLLLMITTLPAGVGVFIYPIAEAVWGELPLL
                     KVVGYTALSLMIGGVVGNIVVRGLFSTSLGILFINPLAMISSLTGIAFLIVQYLP"
                     /name="hypothetical protein"
     gene            complement(1593..2033)
                     /locus_tag="JMX29_RS28410"
     CDS             complement(1593..2033)
                     /locus_tag="JMX29_RS28410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019704629.1"
                     /translation="MSKYLITFDLDTTKLKTLYHGKNYNNAYYDIRSTLSRRGFENIQG
                     SVYLGQEGISEAHGTIAIQELTAKYSWFYECVSNIKFYRIESDLNAQFIADGVNEARKR
                     FYTQLEDMRKSLLSVGLTVEQVNEIIGQQQFKLESTISPDKM"
                     /name="hypothetical protein"
     gene            complement(2262..2390)
                     /locus_tag="JMX29_RS28770"
                     /pseudo=""
     CDS             complement(2262..2390)
                     /locus_tag="JMX29_RS28770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2805..2996
                     /locus_tag="JMX29_RS28420"
     CDS             2805..2996
                     /locus_tag="JMX29_RS28420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_049139654.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEELHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2996..3397
                     /locus_tag="JMX29_RS28425"
     CDS             2996..3397
                     /locus_tag="JMX29_RS28425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_048270303.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKTGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNILLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2278..2684)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.727"
                     /coverage="99.0"
                     /evalue="1.01e-158"
ORIGIN
        1 agtccccggc gagtcgtcat agagtcggta acgactcagg actataaaaa caatgagtta
       61 ataacgaccc gactctagac ccgactcccc gtttggttgt tttttaggcg tggcgactct
      121 gggtacgact ctagtgaaga gttgccggtg aatcgtgtgg tgagtcgttc ggtgacttgc
      181 cataacgtga ttgccggccg tcgacgaacc ggattcctga acgtgctgaa aaccggtttt
      241 ccggctgcgc cggcaacgct tcacggccac gcaataaatt gcgtccccgt tcaccgtttt
      301 cggatgggaa gtacgcccga aacaggactt accctggctg aatggcgtga attttcgcgc
      361 tatgcacttg cgtgcatact catgcatgcc gtaaaaacag agcctgcgcg tttctggcgg
      421 gttttcgggt ggtttgttgc ctgttttacc ggtttcccgt cagaaacgcc ctgaggccgt
      481 tttagcggtg cgtacaatca gggccttatg ttaaatgaca tcgaatggtt ggggttactg
      541 gtccctacag cggagtgaga tgagtgtttg ttagtactca aaagtgcctt ccaacttgct
      601 ctgatgctaa tttttatata accgtttgcc gcgaaagaac attcagtact tattttttaa
      661 ttttttattg tttttatctt gatgtaatat ttaattgatc ttattccgac gttcgccgac
      721 gtttgccgac gttcgccgac gttcgccgac gaatctatag tatccatatt accgcgagat
      781 atttaccctc aaacaaaacc ttatactctg agtgattttt ggccatcaat gcccctttta
      841 actcaattgt aattatcatt ttaaagtctc ctatcaagta ctcaaaagtg ccttccaact
      901 tgctctgatg ctcattttta ttgaaccgtt tgccgcgaaa gaacattcag tacttttcta
      961 aaaatataaa attatttttt atcaatagat tatgtttact cttccttggg tgagtttagt
     1021 gggttgctga aattttatgc ccgatcagat tgctcgtgca tttttgatcg cgatgcgtag
     1081 gaaaccgctc ggtggctagt attaaaatac ggatattttg tatgttgccg gtgcctctat
     1141 tgaagctaag ttgaaacgaa ggcacatctc ttctaaaaaa aagcccgcag tgcgggcctt
     1201 tcatgcgcgt tggggttaat gttatggtaa gtattgcacg attaagaatg ctatacctgt
     1261 aagactggag atcattgcta gggggtttat aaacaaaata cccagcgaag ttgaaaataa
     1321 tccacgaaca actatgttgc caacaacccc tcctatcatg agggataagg cggtatagcc
     1381 tacaactttc agtaacggta gctcacccca tacagcttct gctattgggt agataaagac
     1441 gccaactcca gcgggaagtg tggtgatcat caaaagtaaa tgagatttag ttgcaccgta
     1501 ctctctggtg ctaccaatct tcattagatg agtgatgaat gaggatgccc accatagcgt
     1561 cattataaga agaaaaacca ttttacttat gctcacattt tatcagggct tatcgtgctt
     1621 tctaatttga attgttgctg acctattatt tcgtttactt gttctactgt taaaccaacg
     1681 gatagtaaac ttttgcgcat atcttcaagt tgggtataga atctttttct cgcttcgtta
     1741 acgccatcag cgataaactg tgcgtttaaa tcagattcta tacgatagaa ttttatgtta
     1801 gatacgcatt catagaacca gctgtattta gctgttagct cttgaattgc aatggttccg
     1861 tgagcctcac ttataccttc ctgacctaaa taaacgctac cttgtatgtt ttcaaagccg
     1921 cgtcggctca acgtgcttcg aatatcgtaa taagcattat tgtagttctt gccgtgatac
     1981 aaggttttta actttgttgt atcaaggtca aatgtaatca ggtatttgct catatttttc
     2041 ctgcgcttat taacttttag tagccagctt gactagctgg aaccctaaag cgtatcttac
     2101 cgacgttaaa cgaaaaaaac cgcctgggga ggcggttttt tcaaaggtta agtcagttgg
     2161 ggaactgctt aaccgggtaa ctggcttggt ggagcacaga taccaaatac tgtccttcca
     2221 gtgtagccgc agtagggcca tcacttcaag actcttaata tctaaatcca cctggttctg
     2281 ttaccaatgg ctgctgccag tggcgataag tcgcgtcttt ccggattgga ctcaagacga
     2341 tagttaccgg attaggcgca gcagtcggac tgaacggggg gttcgtgcat acagtccagc
     2401 ttggagcgaa ctgcctaccc ggaactgagt gtcaggcgtg gaatgagaca aacgcggcca
     2461 taacagcgga atgacaccgg taaaccgaat ggcaggaaca ggagagcgca cgagggagcc
     2521 atcaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc actgatttga
     2581 gcgtcaaatt ctgtgatgct tgtcaggggg gcggagccta tggaaaaacg gccgcgctgc
     2641 ggcctcccgt tttcccctac cttgacctct cggttttctc gagctcttat acgcatgctc
     2701 ctgccgctcg ccgcagccga acgaccggag cgtagcgact gagtgagcga ggaagcggaa
     2761 aagagaacat ccctacactg agcactgacg ctctgaggcc tcttatgacg aaacaacaga
     2821 aaacagcgct gaacatggct aaattcatcc agaatcagtc tctgctcctg ctggagaagc
     2881 ttaacgagct tgatctcgat gtcgaggccg acctttgtga ggaactccac gatgatgcgg
     2941 agcatctttt ccgtacactg tcctcgagac tggatgcatt acaggatggt aactgatggc
     3001 cagagtgtct attagtgagg ctgcccgact gacgggcaag agtagaacaa cactgcacag
     3061 gttaattaaa acaggtgacc tgtccacctg tagtggtgag cgcaatgcaa aaatggttga
     3121 tacttcagag cttttacgtg tctttggtcc ctttgagcaa ccgaagggtg aacaccattc
     3181 tggacaggtc tctgaacagc gtgatacagc ctctgctgac cagagtgaac aggtgattcg
     3241 tcatctgaaa caggagattg aacacctgaa tatcttactt ttgtccaagg attcgcacat
     3301 tgacagcctg aaacaggcca tgctccttct tgaaaatcac caggcaaaat taactgaatc
     3361 cccggcgcca tggtggaaat tctggaaaaa atcctgaccc cgtcatgctt ccgttttcct
     3421 ctccggccat cccggggagt tcctgaacct tccaaaaaat cgccggattt ctgaacgctc
     3481 ctcaccacta aaaataccca cacactacgc aaaattaaaa ttttgcggat ttgtatttaa
     3541 tatcagtagt ttaagtctgt aaaattttgt tttttaaatt tgatttatat agatccgact
     3601 ctatgacgac tcgtcatag
//
