LOCUS       NZ_LR890194             4064 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF133 isolate INF133 plasmid 6,
            complete sequence.
ACCESSION   NZ_LR890194
VERSION     NZ_LR890194.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357033
            Assembly: GCF_904863195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:42:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,716
            CDSs (total)                      :: 5,598
            Genes (coding)                    :: 5,449
            CDSs (with protein)               :: 5,449
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 57 of 149
            Pseudo Genes (incomplete)         :: 96 of 149
            Pseudo Genes (internal stop)      :: 23 of 149
            Pseudo Genes (multiple problems)  :: 24 of 149
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890194.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF133"
                     /isolate="INF133"
                     /isolation_source="wound swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="6"
                     /geo_loc_name="Australia"
                     /collection_date="2013-07"
     gene            complement(133..411)
                     /gene="traD"
                     /locus_tag="JMX29_RS28375"
     CDS             complement(133..411)
                     /gene="traD"
                     /locus_tag="JMX29_RS28375"
                     /inference="COORDINATES: protein motif:HMM:NF018152.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_099745350.1"
                     /translation="MGSKKTLEQRMALAQDRLSKLKKEASQKERKAREHKKFTVGGEVT
                     RVFGLDYDLALVVGFLEHFNKLSDEQKQALKNNGERLLKSRLENADK"
                     /name="traD"
     gene            complement(401..832)
                     /locus_tag="JMX29_RS28380"
     CDS             complement(401..832)
                     /locus_tag="JMX29_RS28380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_157769352.1"
                     /translation="MNKKQALWIGGKMNKKEIEKRLLIFTSEIDIEDIKNDFINDEVNE
                     DVFNRCLKLYYAIDDAIYNNKKSLFEALIYLINKDRENKDHDEPIITDYDLVYLTLNNY
                     INIYELKKLFLLQKNINDFDFKSMISEIEKIKREVEYGK"
                     /name="hypothetical protein"
     gene            1092..2351
                     /gene="mobQ"
                     /locus_tag="JMX29_RS28385"
     CDS             1092..2351
                     /gene="mobQ"
                     /locus_tag="JMX29_RS28385"
                     /inference="COORDINATES: protein motif:HMM:NF041496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_099745348.1"
                     /translation="MALYRLEMQNVSRSDGVSSVAKAAYRHRSVMIDERTGEIHGEKSA
                     NRDDLVYAEILAPEGTPDFLIKSSNDLWNYVEKTEKRKDARTAKEFKITLPCELTNEQN
                     IKLLKEYLTKNFVSKGIICDFVIHNDKDNKNPHAHVMITTREITLSGFGKKVRSWDEEK
                     TLHDWRKQWAKVQNQHLKNAGLKSRVSHRTLEEQKNIMIDLAKKAEDAKDFDKSILYLA
                     KAIELDRPPMQNLSRKKWRTKEGQEQRKRDQAIRDRARADARAFRLLRGVAVVDVASFV
                     VHPLEKKEQSKNNDFSEKKSWWRSTVNFIKNIKAKFSTKKDIKNDVHASDDLMTDPVTG
                     LPITKAKWQEMSDRANVRTPQPAISYQVKQSDGEGLKTAQNALQDVLDVSEGKSLKVKS
                     VPVPGSRKRRVVEEDSSDNG"
                     /name="mobQ"
     gene            2660..3517
                     /locus_tag="JMX29_RS28390"
     CDS             2660..3517
                     /locus_tag="JMX29_RS28390"
                     /inference="COORDINATES: protein motif:HMM:NF015076.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_099745352.1"
                     /translation="MILQKEYSRSDFINQIISRPFCTDDFKRDGIYRTNKRRALNSVYI
                     EHNNDSFINSIVFDIDSDTAAIAWQDADIPKPNFITQNPANGHAHLFYALSSPVCITEN
                     ARRKPQKLLKGVIEGLTERLGADPCYTGKITKNPLNPRWRTFWNEQPRFELNYLCEFID
                     TNKRVKKEVRKSIVAEGRNTALFDSLRFYAYSIIFKYQKNDDFCGFISALQEEAENIND
                     SFEDQLSFKEINHTIRSISSWVWGTFDSDTFSEIQSNRAKKAKGKTKTNTKAKKLIEFI
                     GVKK"
                     /name="replication initiation protein"
     gene            3514..3783
                     /locus_tag="JMX29_RS28395"
     CDS             3514..3783
                     /locus_tag="JMX29_RS28395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="WP_099745351.1"
                     /translation="MKGNEIRKGLTQKEMAKKFNLSLSTVKKYTSQPREHYESEAENRR
                     KTAYTLHHKKGLKWREVAEKMNTTENAVKALAKRYKQIDQENRG"
                     /name="sigma factor-like helix-turn-helix DNA-binding
                     protein"
     gene            complement(3798..4064)
                     /locus_tag="JMX29_RS28400"
     CDS             complement(3798..4064)
                     /locus_tag="JMX29_RS28400"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113519627.1"
                     /translation="MSQKKEQKTAEKPTAGPLRKHRSRAEKIDDLKKQISELRKAEREE
                     RQRARDEKLIILAKAVYEKAGKPKDIEALIDFVKSEDFKIEYK"
                     /name="hypothetical protein"
     Typing          1183..2348
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttttactct cccggatgat atgtttttta aacatatcac aaagccgggc tacggtgaag
       61 actaacgcac aagccccgcc agcggcgggt tcttgcttgt tcaacccttc caagtgtcag
      121 attagaaatc tgtcacttgt cagcgttttc tagacgtgat tttagcaatc tttcaccatt
      181 gttttttaac gcttgttttt gctcatcgct taacttgtta aagtgttcaa gaaaacccac
      241 tacaagagct agatcgtaat ctaaaccaaa cacccttgta acttcaccgc caacagtaaa
      301 ttttttatgt tctctagctt ttctttcttt ctgcgatgct tcttttttaa gtttagataa
      361 tctatcttgt gcaagtgcca ttctttgctc taacgttttt ttacttccca tactcaacct
      421 ctcttttaat tttttctatc tctgaaatca tacttttaaa atcaaaatca ttgatatttt
      481 tttgtaataa aaacaacttt ttcagttcat agatatttat gtaattattt agtgttaaat
      541 acacaagatc ataatcagtt ataattggtt catcatgatc tttattttca cgatctttat
      601 ttatcaaata tatcaacgct tcaaacaatg attttttatt gttatagatt gcatcatcga
      661 tagcgtaata cagctttaaa cacctattaa aaacatcttc attaacttcg tcattgatga
      721 aatcgttttt aatatcttca atgtcgatct cgcttgtaaa aatcaatagc cttttttcta
      781 tttctttttt attcatttta ccaccaatcc ataatgcttg ttttttattc aatatcgtaa
      841 cttttaaata ttgtcaaatt tgactttaat ttaatcagag ttaatttata tatatcagtg
      901 aaagaaaagc tagtttgttt ttcattcctc ttttagtttg agcgttagcg aaaaataaaa
      961 gctaaggaat gcccggttac gcattgtaaa caatgccggg gtctgccgac ggctaaaacc
     1021 tgtttttctt acgaaaaact aaaacccaaa cccaaaagaa aaaatagggg ttctcatgag
     1081 gatataatta tatggcttta tatagattag aaatgcagaa cgttagtcgt tcggatggtg
     1141 tcagctcagt tgcaaaagct gcttatcgtc atcgttccgt catgatagat gaacgaaccg
     1201 gagaaataca cggcgagaaa tcagctaatc gtgacgatct ggtttatgct gaaatattgg
     1261 caccagaagg aacgccagat tttttgatta aatcaagcaa tgatctatgg aactatgttg
     1321 aaaaaacaga gaagagaaag gacgcaagaa cagcaaaaga atttaaaata actttgcctt
     1381 gtgaacttac caatgaacaa aatataaaac tattgaaaga atacttaaca aaaaactttg
     1441 ttagtaaagg catcatttgc gactttgtta tacataacga caaagacaat aaaaacccgc
     1501 acgctcatgt gatgattacg acaagagaaa taacgctttc aggatttggt aaaaaagtaa
     1561 ggtcatggga tgaagaaaaa acccttcatg attggcgtaa acaatgggca aaagttcaaa
     1621 atcagcattt gaaaaatgca ggcttaaaat ctcgcgtcag tcatagaaca ctagaagaac
     1681 aaaaaaatat aatgatcgat ttagctaaaa aagcagaaga tgcaaaagat tttgacaagt
     1741 ctattttata tctagcaaaa gctattgaac tagatcgccc accaatgcag aacttatcac
     1801 gtaaaaaatg gagaacaaaa gaaggtcaag aacaacgcaa acgtgaccaa gctatcagag
     1861 acagggcgag agccgacgct agggctttca ggttgttgag aggtgttgca gttgttgatg
     1921 ttgcttcatt cgtggttcat ccgttagaga aaaaagagca gtcaaaaaat aatgactttt
     1981 cagaaaaaaa atcttggtgg cgttctactg ttaattttat aaaaaatatt aaagctaagt
     2041 tctcaactaa aaaagatatt aaaaacgatg tccatgcatc agacgattta atgactgatc
     2101 cggtgacggg tttaccaatc accaaagcga aatggcaaga gatgagtgac agggcaaacg
     2161 taaggactcc acagcctgcg atctcatatc aggttaagca atcggacggg gaagggctaa
     2221 aaacggctca gaatgcgtta caggacgttt tagacgtatc agagggtaaa tcgttaaagg
     2281 tgaagtctgt gccggttccg ggttctcgta agcgtcgagt tgtcgaggaa gacagcagtg
     2341 acaacggtta gctaaccagc acagccagat cctacataag attacagggc ttcgctcata
     2401 gcctacggcc tgtacctatc aggctatagc ttaacttgtg atgatttgaa gccttcggcc
     2461 tgtgcttcgc aaaaataccc ccagacccat tattacctga tatggctaaa atgaccactt
     2521 gacacttttt tagtggtgac tacttgacac catgaaaggt tatgttagaa cagtaatata
     2581 aaaacaaaaa tccctgattt ccgaatgttt ggcgacagga gaaaatcagg gatctacaat
     2641 aaaaggattg tattaaaaaa tgatactaca aaaagaatat agcagaagtg attttataaa
     2701 tcaaattata tcaagaccat tttgcactga cgacttcaaa agagatggta tttatagaac
     2761 aaacaaaaga cgagctttaa acagcgttta tatcgagcat aacaacgata gcttcattaa
     2821 ctctattgtg tttgatattg acagcgatac agcggctatt gcatggcaag atgcagatat
     2881 accgaagcct aactttataa ctcaaaatcc ggctaatggt cacgctcatt tattttatgc
     2941 cttatcatct cctgtttgta taacagaaaa cgccagaaga aagccacaaa agttattaaa
     3001 aggcgttata gaaggactca ccgaaagatt aggtgcagat ccttgttata cgggcaagat
     3061 aacaaaaaac cctctcaatc cgagatggcg tacattttgg aacgaacaac caagatttga
     3121 attgaactat ctatgtgagt tcatagatac aaataaaaga gtaaaaaaag aagtaagaaa
     3181 atcaatagtt gcagagggaa ggaatacagc gttatttgat agtctgcgtt tttacgctta
     3241 cagcataatt tttaaatatc aaaaaaatga tgatttctgc ggtttcattt cagcattaca
     3301 agaagaagct gaaaacataa acgattcatt cgaagatcaa ctaagcttta aagaaataaa
     3361 ccacacaata agaagcattt catcttgggt atgggggact tttgatagtg atactttcag
     3421 cgaaatacaa agcaacagag caaagaaagc gaaaggtaaa actaaaacca atacaaaagc
     3481 aaaaaaactt atagaattta taggagtaaa aaaatgaaag gcaacgagat aagaaagggc
     3541 ttaacacaaa aagagatggc taaaaagttc aatctttctt taagcactgt aaaaaaatac
     3601 acttctcaac caagagaaca ttatgaatca gaagcagaaa acagaagaaa aacagcttat
     3661 acgttacacc ataaaaaagg cttaaaatgg cgtgaagtag ctgaaaaaat gaatacaaca
     3721 gaaaatgccg ttaaagcatt agccaaaaga tacaaacaaa tcgaccaaga aaacaggggc
     3781 taaaatgccc cttagcttta tttatattca atcttgaaat cttcagactt tacgaaatca
     3841 attaatgctt caatatcttt tggttttcct gccttttcat aaacagcttt tgcaagaata
     3901 attaattttt cgtctcttgc tcgttgtcgt tcttctcttt ctgcttttct tagttcgcta
     3961 atctgctttt ttaaatcgtc tattttttca gctctagatc tgtgtttacg aagtggccct
     4021 gcagttggtt tttctgctgt tttttgctct tttttttgag acat
//
