LOCUS       NZ_LR890187             4693 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF072 isolate INF072 plasmid 3,
            complete sequence.
ACCESSION   NZ_LR890187
VERSION     NZ_LR890187.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357068
            Assembly: GCF_904863145.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Hawkey,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2020) THE UNIVERSITY OF MELBOURNE, 30 Flemington
            Rd, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 15:43:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,502
            CDSs (total)                      :: 5,379
            Genes (coding)                    :: 5,263
            CDSs (with protein)               :: 5,263
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 51 of 116
            Pseudo Genes (incomplete)         :: 63 of 116
            Pseudo Genes (internal stop)      :: 25 of 116
            Pseudo Genes (multiple problems)  :: 20 of 116
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR890187.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4693
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF072"
                     /isolate="INF072"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2013-05"
     gene            complement(221..853)
                     /locus_tag="JMV85_RS27355"
     CDS             complement(221..853)
                     /locus_tag="JMV85_RS27355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012579086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_064765251.1"
                     /translation="MKNINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIESFDEKESIFIILDADTSFTDTERSIIATLRELQISTPSAHNEIAMNGN
                     TKISFFIMPGKDKPGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDNISASDEEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKSFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(853..1968)
                     /locus_tag="JMV85_RS27360"
     CDS             complement(853..1968)
                     /locus_tag="JMV85_RS27360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_101989636.1"
                     /translation="MIKEISLKNFKCFNELHLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKSRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGVNYKFKTATIITTSRKINKEATITNVSNLLTQKRKKDILEN
                     LRKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            2832..3023
                     /locus_tag="JMV85_RS27365"
     CDS             2832..3023
                     /locus_tag="JMV85_RS27365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_064765249.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLTSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3023..3424
                     /locus_tag="JMV85_RS27370"
     CDS             3023..3424
                     /locus_tag="JMV85_RS27370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_024623230.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(4265..4474)
                     /locus_tag="JMV85_RS27375"
     CDS             complement(4265..4474)
                     /locus_tag="JMV85_RS27375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgH/BhsA/McbA-like domain containing protein"
                     /protein_id="WP_064765250.1"
                     /translation="MKTIKTFVAVATLSMMSFGAFAQSVSATASTLDRAEAKIAAQAAE
                     QGASYKITSAQFNNRVHMTAELTK"
                     /name="YdgH/BhsA/McbA-like domain containing protein"
     Typing          complement(2314..2784)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.103"
                     /coverage="92.0"
                     /evalue="1.6299999999999998e-172"
ORIGIN
        1 aaaatttttt taagtgaata gagagaatat aacttaaggg agcgccttgt gctggatctt
       61 ttacattaga tttgcacaat cattgttttg gcatctggtg atgtcttgag gacgtttgag
      121 attactgata actaaagtat atgatgcttt ctatacgtta tccggcgttt aataacgctc
      181 tgggataagc cagcctgtga agggctggct taattttgat ttatattttt gaaataaaac
      241 tttttatttc atcaaaacaa ttgtctgctg tgtttattat tccatttttc atggatattc
      301 ctatccttga gtcggattct ctattgcagc taagatagac ttgtacctta gctttttttt
      361 cgttggttgg ataagtgtac tcttcgtcac tcgctgagat gttgtcttta ttatttttaa
      421 ttttttcgaa gaattctatt atgtattcat ataacgctcg agtgcttgcg tgttcaatta
      481 tcagatcttc aatggcacct ggcttgtctt ttcctggcat tataaagaaa gaaatttttg
      541 tattgccatt catagctatt tcgttatgcg cgctgggggt ggagatttgt agttctcgca
      601 atgtggcaat tattgatctt tctgtgtcag taaatgatgt atcagcatct aatataataa
      661 aaatgctttc tttttcatcg aaagactcaa tgtttttgaa tgctctaagt gcttgtttta
      721 atttcgattt tccatttatc ttctcgacaa aaacatcggt aatgccttgt atttcaagta
      781 ggttgcatag aaaatgaaaa tcatcatcac cctcaacaaa aatgatcttc ttgctattgt
      841 ttatgttttt cattatctga cctcccagtc gttctctacc gagtaggaaa aatcatccat
      901 attgaattgt acggctgttg gttttaggga gttcttttct cttcctagtc taatgtaagc
      961 gatgtcttca tttttgctat ctatttcgtt tattgctcgt atcacatctt gactatgagt
     1021 tgttgcaaat atttgattgt tgttttgttt tgcagatgaa attaatgatt ttattatgtc
     1081 tttaattact gagtaatgta ttccgttctc gatttcatca ataagaataa ttgagttttc
     1141 ctgtaccaat actgagctaa tgaaagataa tgctcgactg ataccctcgc caagcattga
     1201 tatttcattt agctcgctaa agccaatatc taaatatatt tccttgttgt tacctattgc
     1261 agatattgct atatctacaa ttctgtcatc tatttttctt aagttttcta atatatcttt
     1321 ttttcttttt tgtgttagta gatttgatac atttgtaatt gttgcctctt tgtttatctt
     1381 tctggatgtt gttattatcg ttgctgtctt aaatttataa ttaaccccat ctctttcgtt
     1441 ttttatttct gattttattt ctacgccatc ttctttcaat tgcatagaga aaagcttatt
     1501 ggaaactctg ctttttgcat tgggtgtctc ggtcacgttt atttttaacg agtttactgt
     1561 ggcctgagaa ccgatagttt gacgaggtat gttttggtta gatagtacgg tgtcaacgtt
     1621 tagagataaa cttgattcta gtctctgatt tgtttctgtt tcatatgttt gtgttacttc
     1681 agagcgttca tctcgaatga ctatggacat cttttgtgat gtgtccatgt cgtgaaagta
     1741 actaacccaa aatggcttgt ttttgtttat ttctgccatt tcttttctga atgcttgaat
     1801 gtttaacaag acggctgggt tttttacatc ataaaaacaa aatatagcat ccagtataga
     1861 ggttttcccg tagttgtttt tcccagctat gatatttaaa gtctttaatt gctttagatg
     1921 tagctcattg aagcatttga aattctttaa acttatttcc tttatcatga tagcctctgt
     1981 tcgtgttttt gttatatgcc atacgatttg ttagtgcctt aataaaatgt acagctttca
     2041 ttgtgattag ctagacttta tgtcaaagat taactttgat tgcttgtgtt ttaatcgatt
     2101 ttttttactt tcttcttgag attatctggc agcagccgta agcttccggc tgtgaacgaa
     2161 aaaaaccgcc ttggcgggcg gttttttcga aaggttcagt agagttggcg ctctatgaac
     2221 cgaggtaact ggcttaaagg gagcgcagtc accaaaactg ttcgtttagt ttagccttaa
     2281 ctggcgtata acttcaagac taactcccta aatcagttac cagtggctgc tgccagtggc
     2341 gctttgtcgt gtctttccgg gttggactca agacgatagt taccggatta ggcgcagcag
     2401 taggactgaa cggggggttc gtgcatacag tccagcttgg agcgaactgc cttcccggaa
     2461 ctgagtgtca ggcgtggaat gagacaaacg cggccataaa cagcggaatg acaccggtaa
     2521 accgaatggc aggaacagga gagcgcacga gggagccatc agggggaaac gcctggtatc
     2581 tttatagtcc tgtcgggttt cgccaccact gatttgagcg tcagattctg tgatgcttgt
     2641 caggggggcg gagcctatgg aaaaacggcc gctgtgctgc cttctccctc tccgtgctgt
     2701 ctgctctatg tcgttatgtg cgcgttgcga ccgctcgccg cagccgaacg gcaggagcgt
     2761 agcgactgag tgggcgagga agcggaaaag agactggttt tacactgagc actgacgctc
     2821 cgaggcctct tatgacgaaa caacagaaaa cagcgctgaa catggctaaa ttcatccaga
     2881 atcagtctct gctcctgctg gagaagctta acgagcttga tcttgatgct gaggccgacc
     2941 tttgtgagaa actccacgat gatgcggagc atcttttccg tacactgacc tcgagactgg
     3001 atgcattaca ggatggtaac tgatggccag agtgtctatt agtgaggctg cccgactgac
     3061 gggtaagagt agaacaacac tgcacaggtt aattaaagca ggtgacctgt ccacctgtag
     3121 cggtgaacgt aatgcaaaaa tggtagatac ttcagagctt ttacgtgtct ttggtccctt
     3181 tgaacaactg aagggtgaac accattctgg acaggtctct gaacagcgtg atacagcctc
     3241 tgctgaccag agtgaacagg tgattcgtca tctgaaacag gagattgaac acctgaacac
     3301 cttacttttg tccaaggatt cgcacattga cagcctgaaa caggccatgc tccttcttga
     3361 aaatcaccag gcaaaattaa ctgaatcccc ggcgccatgg tggaaattct ggaaaaaatc
     3421 ctgaccccgt catgctttag ttttcctctc cggccattcc ggggagttcc tgaaccttcc
     3481 caaaaatcgt cagatctctg aacgctcctc accactaaaa atacccacac cccacgcaaa
     3541 attaaaattt tgaagataac ccattaatat cagttagttg ttggttatta aattacggag
     3601 tattactttc tgtaaggtga atccaagtcg tcggcaagtc gtagacgaat cgccgacgac
     3661 ttgtcataga gtcatcgacg actcacttaa gactatcagt aacttatgac gacttgactc
     3721 tagagtcgaa tcgtcatttt ggtgtttttt tgaccttggc gactctagag tcaagtcacg
     3781 agtcgaatcg ctggtgaatc gtgtggtgag tcgtccggcg acttgcctaa cgtgattgcc
     3841 ggccgtcgac gaacccgatt cctgaacgtg atgaaaaccg gttttccggc tgcgccggca
     3901 acgcttcacg gccacgcaat aaattgcgtc cccgttcacc gttttcggat gggaagaacg
     3961 gtggaaacag gactaaccct ggctaaatgg cgtgaatttt cgcgctatgc acttgcgtgc
     4021 atactcatgc atgccgtaaa aacagagcct gcgcgtttct ggcggggttt cgggtggttt
     4081 gttgcctgtt ttgccggttt cccgtcagaa acgccctgag gccgttttag cggtgcgtac
     4141 aatcatggct ttatgttaaa tgatagatgc aaaaaagccc cgaaggggcc tgaaggtttt
     4201 cctgctaagg ggcgaaacgg gccgccttcc ggcgacctgt tcggcagctc cctctgcgac
     4261 catcttattt ggtcagttca gccgtcatgt ggacacggtt attgaactga gcgctggtga
     4321 ttttgtatga cgcaccttgt tcagcggcct gtgcggcaat ttttgcttca gcacgatcca
     4381 gggtggaggc ggtagcgctg acgctctgag caaacgcacc gaaagacatc atggatagag
     4441 tggcaactgc aacgaaagtt ttgatggttt tcatggtcgt attccttaag taattttgtt
     4501 ctgtatgggg cgttgttgcc ctgatgtgat aaatgatagg gcgaccatga gctgattaaa
     4561 atcgaaacaa tttgcggata tcattcaaaa aaatagaaca aaaaatgagc acatcaaaac
     4621 caggtgtgag actctgattt aggggtgggc aggatgaata gcctcgaggg gtcgtaaaat
     4681 tatggtctta tgt
//
