LOCUS       NZ_LR135487             1928 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E4456 plasmid 6.
ACCESSION   NZ_LR135487
VERSION     NZ_LR135487.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4884734
            Assembly: GCF_900639745.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:08:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,915
            CDSs (total)                      :: 2,824
            Genes (coding)                    :: 2,690
            CDSs (with protein)               :: 2,690
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 54 of 134
            Pseudo Genes (incomplete)         :: 81 of 134
            Pseudo Genes (internal stop)      :: 23 of 134
            Pseudo Genes (multiple problems)  :: 21 of 134
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135487.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E4456"
                     /db_xref="taxon:1352"
                     /plasmid="6"
     gene            complement(<1..635)
                     /locus_tag="EQB55_RS15320"
     CDS             complement(<1..635)
                     /locus_tag="EQB55_RS15320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_127824082.1"
                     /translation="MSKKGIIVNEWEKLNRISNRRLSVDDKVHPLKLSWSIDRITIVGK
                     LNDTIAYWTQNGVVFVDFEQLMRLNENQGYLKSVGTNGWQLFDQYGEDIAYIEMLKFHP
                     DKGRIDFNPNKIGEFLKGSMKQFIHDLFLDAHFSRADIACDILGVPDDFITQYRIVDPV
                     SFKPIYGRSGKLETAYWGSRASERQVRMYNKKLEQERKKQIVPKEIET"
                     /name="replication protein"
     gene            complement(<1216..1398)
                     /locus_tag="EQB55_RS15330"
                     /pseudo=""
     CDS             complement(<1216..1398)
                     /locus_tag="EQB55_RS15330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002313295.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(1598..>1928)
                     /locus_tag="EQB55_RS15335"
                     /pseudo=""
     CDS             complement(1598..>1928)
                     /locus_tag="EQB55_RS15335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305967.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=2
                     /transl_table=11
                     /product="replication protein"
                     /name="replication protein"
     Typing          complement(1599..1928)
                     /name="rep_cluster_1968"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.4599999999999998e-172"
ORIGIN
        1 catgtttcga tttcttttgg tacaatctgt ttttttcgtt cctgttcaag ctttttgttg
       61 tacatccgca cttgtcgctc gctggcacga ctaccccagt acgctgtttc taatttgcca
      121 gaacggccat aaattggctt aaaagacaca gggtcaacga ttcgatactg ggtaataaaa
      181 tcatcaggaa caccgagaat atcgcaagca atatctgcac gtgagaaatg cgcatccaga
      241 aacaaatcat gaatgaattg tttcatcgac ccctttaaaa actcgccaat tttatttgga
      301 ttaaaatcaa tacgaccttt gtcagggtga aattttaaca tttcgatata ggcgatatct
      361 tctccatatt ggtcaaataa ttgccaacca tttgtaccaa ccgacttcaa atacccttga
      421 ttttcattca aacgcattaa ttgctcaaaa tcgacaaaca caactccatt ttgcgtccaa
      481 taagctatgg tatcattcag ttttccgacg attgtaattc gatcgattga ccaacttaat
      541 tttagggggt gtaccttatc gtcaacactt aaccgcctgt tagaaatacg gttaagtttt
      601 tcccactcat ttacgattat gcctttttta ctcaaaaata gctcctcctc aacgaaaaaa
      661 gagattcttg gaaagaattt ccagagttca cgtaactcta aaaatccaca tccaaaaatc
      721 tctagcttga agaaacctaa aaatattcgt ataatgaact tgagttacgg aactaggtga
      781 agtagtttcc gtaaaggtcg agagtgcgtc aacactgctc gactattttt ttactctttt
      841 ttctcatttt ctttgattat agcactcctc tagaaaaaat aaaaagacct cagggaattt
      901 cattccccga accccttgag cctcctcctg ccgaaataga atggcgctgc cagcatttat
      961 ttcgttcagc tatcggctac acaatctaac acgaccgttc cgctaccagt cgccttacag
     1021 gctccatttt cgctcctcta acgtgtttca ccgattgtgc cgataactaa acgaaataaa
     1081 cgctaaaacc gctcagaacg caaaatatgc cattttagag ctattgtaga aaatatagtt
     1141 tgaaatgcaa ttttcttctt tcagcttttt atttcccact tgtaaatctg ctaattattt
     1201 tctaccagac aaactattga ttttttggct atcagttaac tcacgattat tatgagaaat
     1261 gcttgtattt tttgttccct ttttgaacga aatactaaac cccaagttaa acccctcctt
     1321 cgcgctgtcg ctaataaaaa gagtgtaaac ctttctgtta ctctttgaca aagagtaaca
     1381 ttttcctaat tgtgacatgg ctgtcacaat tccaaatgct ctccgagggt attcgctgtc
     1441 acaagtgaca acgaaaaaag gagccgaaag cgtgtcacgc tctcaactcc ttttacgctt
     1501 tattttgctt cacgcaaaat aatcgcttat cgtaaactca cgtcattaaa cattgacgta
     1561 aatttactct cactcatctg acttttctta ttcggtatca cttctctgtc acgtccaaac
     1621 ccaaaagcca cgtgtctaat tctattttca agtcgtttgc agattcctta aacgtctctc
     1681 gtaaatgatt cgtcaactca tcgttttggc tttcttcttt caacaatttg cgcaatctat
     1741 atttcaaatt tctgctaata tacgcccact ctgaatgatc ttgattcagc ccttttatca
     1801 taattctatc aacaggtttt acatctccag gcaagtaatg aggacttgca aagctatcta
     1861 aactttcccg aaccatcgca tgccaatctg ttgctttgcc acgtcttagc tgcatttcta
     1921 tacgccac
//
