LOCUS       NZ_LR135453             4305 bp    DNA     linear   CON 01-JUN-2024
DEFINITION  Enterococcus faecium isolate E7114 plasmid 11.
ACCESSION   NZ_LR135453
VERSION     NZ_LR135453.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4884989
            Assembly: GCF_900639665.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 4305)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900639665.1-RS_2024_06_01
            Annotation Date                   :: 06/01/2024 05:45:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,307
            CDSs (total)                      :: 3,214
            Genes (coding)                    :: 3,062
            CDSs (with protein)               :: 3,062
            Genes (RNA)                       :: 93
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 61 of 152
            Pseudo Genes (incomplete)         :: 92 of 152
            Pseudo Genes (internal stop)      :: 32 of 152
            Pseudo Genes (multiple problems)  :: 27 of 152
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135453.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4305
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E7114"
                     /db_xref="taxon:1352"
                     /plasmid="11"
     gene            complement(<1..1067)
                     /locus_tag="FSA55_RS16440"
     CDS             complement(<1..1067)
                     /locus_tag="FSA55_RS16440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016173818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_284167073.1"
                     /translation="MGFSISFKKGTKNTSISHNNRELTDSQKINDWHKHIDFTKSDENI
                     YLEQINIREKYEELFGEAVEKYNAKQKRADRKIEDYLAKVRKDKKMEPQREFIVQIGTL
                     DDFRTTRDDGSSTGISEQQAEQNRVIANKILVEYFKEFKERNPSLSVYNAVIHNDEVSP
                     HLHLNIVPVAEGYKRGVQKQPSFNKALQQQGLRADKENGRVIWNNFRNQEVESIERLMA
                     DFGWERELVGTNKIKDIHEYKEIMSEISELRQTAVKERESVSDELRYICRQREENEREK
                     ALVASERAKIEEEKKNMLNVKKEMAVIFQKDMVPLESFKRLPDGSYHLSGNDFVDLYQR
                     ATRATNAKRNADNMS"
                     /name="plasmid recombination protein"
     gene            complement(1289..1651)
                     /locus_tag="FSA55_RS16445"
     CDS             complement(1289..1651)
                     /locus_tag="FSA55_RS16445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016173819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002313294.1"
                     /translation="MGMTLADIKVQEEKLKKEQAKLRQQKKRLIEKENAAMGKALRKRF
                     GFESFADFERWLSSISDDQQHEKSVGNELRADEKSAPSERNYPNESDGIFGGIPNRKSQ
                     MSESGFASMFSDVNSR"
                     /name="hypothetical protein"
     gene            complement(1655..1963)
                     /locus_tag="FSA55_RS16450"
     CDS             complement(1655..1963)
                     /locus_tag="FSA55_RS16450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002292673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002304909.1"
                     /translation="MDKIDLREETVNRIEVMYERLADYLNLSDEDNYSEMLERMMDVLN
                     SVINADLAKSSVLTNEFVHKHLAQTTDEAEKEFWLKLMSHIMQLNQISVINSKEKGM"
                     /name="hypothetical protein"
     gene            complement(1972..2391)
                     /locus_tag="FSA55_RS16455"
     CDS             complement(1972..2391)
                     /locus_tag="FSA55_RS16455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002351943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002305964.1"
                     /translation="MTDSTDKMTIKALADELGITKNTVRNYLVKAGYDLARYKKNGIIL
                     LDKELIGVARSIYRSKGGQLTGHLPVNSTGSDFPLEKENEFLRDQLAEKDKHISELTEM
                     IRDQQKLTLLQQQKNDQLLLENQELKNRKWWQFWK"
                     /name="hypothetical protein"
     gene            complement(2388..3377)
                     /locus_tag="FSA55_RS16460"
     CDS             complement(2388..3377)
                     /locus_tag="FSA55_RS16460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002349057.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_002304903.1"
                     /translation="MKKKKQDLINGTFREKKKNLKKVVAFSDNRISPKMRELMTGCGSY
                     LEFIATIDKEKKKLVQAHFCKNRFCPLCAWRKARKDSMMLSIMMQAIAEEKQYQFIFMT
                     LTTPNVKAECLNDEIDLFNHALKKMFMRKRVKTSIKGYVRKLEITYNKKRNDYNPHFHL
                     ILAVNKSYFTDKDYYIKQSEWLDLWREVTGKTGINPDGTDEITQLDIRKVKGFQQEKAV
                     QEVAKYSAKDFELTESQEVFDTFYHAMKGRQLITFNGVFKEYKKKYESGDLDRYKKKDE
                     NEYFWFLTASWMRKESKYAVDYREMSADERNYFSGMYVDEKSVEGENE"
                     /name="protein rep"
     gene            complement(3966..>4305)
                     /locus_tag="FSA55_RS16465"
                     /pseudo=""
     CDS             complement(3966..>4305)
                     /locus_tag="FSA55_RS16465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016173818.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=2
                     /transl_table=11
                     /product="recombinase"
                     /name="recombinase"
     Typing          complement(4..1067)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.155"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcactcatgt tatcagcatt tctcttggca tttgttgctc tcgtagctcg ttgatacaaa
       61 tcaacaaaat cattcccaga taaatgatac gaaccatcag gaagcctctt gaaactttct
      121 aaaggaacca tatctttttg gaaaatgacc gccatctctt tttttacatt cagcatattt
      181 ttcttctctt cttcaatctt cgctctctca gaagccacca gagccttctc acgctcgttt
      241 tcttctcttt gcctacaaat atacctcaac tcatcagaaa cgctctcacg ctcttttacg
      301 gccgtttgac gcaattcgga aatttcgctc atgatttctt tgtattcatg aatatctttg
      361 attttgttag taccgactaa ctcacgctcc caaccaaaat ctgccatcaa acgttcaatt
      421 gactcaactt cctgattcct aaaattattc caaatcactc gaccattctc tttatctgct
      481 cgtaaaccct gctgttgcaa ggctttgtta aaacttggtt gcttttgaac accccgttta
      541 tacccttcag caacaggaac aatattcaaa tgcaggtgcg gacttacttc gtcattatga
      601 ataacagcat tgtagacgga taaactagga ttccgttctt taaattcttt gaaatactca
      661 actaaaattt tgttggcaat cactcgattt tgttctgctt gttgttccga tatgccagta
      721 gaagaaccat catcacgagt agtacgaaaa tcatcaagag taccaatttg cacgataaat
      781 tctcgctgtg gttccatttt tttatccttg cgaacctttg ctaaatagtc ctcaattttt
      841 ctatcggctc ttttctgctt tgcattatat ttttctacgg cttcaccgaa taattcttca
      901 tatttttcac gaatatttat ttgttccaaa tagatatttt catccgattt tgtgaaatca
      961 atatgcttat gccagtcatt gattttttgg ctatcagtta actcacgatt attatgagaa
     1021 atgcttgtat tctttgttcc ctttttgaac gaaatactaa accccaagtt aaacccctcc
     1081 ttcgcgctgt cgctaataaa aagagtgtaa acctttctgt tactctttgt caaagagtaa
     1141 cgttttccta attgtgacat gactgtcaca attccaaacg ctctccgagg gttttcgccg
     1201 tcacaagtga caacgaaaaa aggagccgaa agcgtgtcac gctctcaact ccttttacgc
     1261 tttattttgc ttcatgcaaa atattcgctt atcgtgaatt tacgtcacta aacattgacg
     1321 caaatccact ctcactcatc tgactttttc tattcggtat ccctccgaat attccgtcag
     1381 attcgttagg gtaattccgt tcgcttggtg ctgatttttc atcagctcgc aactcattac
     1441 ccactgattt ttcgtgttgc tgatcgtcag aaatcgacga tagccaccgc tcaaaatcag
     1501 caaaagattc aaacccaaaa cgcttgcgaa gagccttgcc cattgcagca ttttctttct
     1561 caatcaatcg tttcttctgt tggcgaagtt tcgcctgttc tttttttaat ttttcttctt
     1621 gcactttaat atctgctaaa gtcattccca taaactacat ccccttttct ttggaattaa
     1681 taacggaaat ttggtttaac tgcataatat gactcattaa tttcaaccaa aattcttttt
     1741 cagcttcatc agttgtttgc gctaaatgct tatgaacaaa ttcattagtc aaaactgaag
     1801 attttgctag atcagcattg ataaccgagt tgagaacatc catcattcgt tcaagcatct
     1861 cactataatt atcttcatcc gaaagattca aataatcagc taaccgttca tacatcactt
     1921 caattctatt gactgtttct tctctcaaat caattttatc catgtcacat ctcacttcca
     1981 gaattgccac cattttcgat tttttaattc ttgattttct agtaacaact gatcgttttt
     2041 ttgttgctga agcagggtca atttttgttg atcacgaatc atttctgtta attcagaaat
     2101 atgtttgtcc ttctcagcta attgatcacg caaaaactca ttctcttttt ccaaaggaaa
     2161 atcactgccc gtgctattga ccggtaaatg accagtcaat tgaccacctt ttgaccgata
     2221 aattgaccga gcaacaccaa tcaactcttt gtctagcaag ataattccat ttttcttgta
     2281 ccgagcaaga tcatatccgg ctttgactag ataatttctc actgtatttt tggttattcc
     2341 tagttcatca gcaagcgcct taattgtcat tttatccgtt gaatcagtca ttcattttcc
     2401 ccctcaacag atttttcatc gacatacatt cctgaaaaat aatttctttc atcagcactc
     2461 atctcacgat aatcaaccgc atatttcgat tctttcctca tccacgaagc agtcaaaaac
     2521 caaaaatatt cattctcatc ttttttctta taacgatcaa ggtcacccga ctcatatttt
     2581 ttcttgtatt ctttgaatac accgttaaac gtaatcaact gacgaccttt cattgcatga
     2641 tagaatgtgt caaacacttc ctgactttcg gtcagttcaa aatcttttgc cgaatatttc
     2701 gcaacttcct gtactgcttt ttcttgttgg aaccctttga ccttgcgaat atccaactgg
     2761 gtaatttcgt cggtaccatc cggattaatt cccgtttttc cggtcacttc ccgccacaaa
     2821 tctaaccatt ccgattgctt gatataataa tctttatccg tgaaataaga tttatttact
     2881 gccaaaatca agtgaaaatg cgggttatag tcattccgtt ttttgttgta cgtgatttcc
     2941 aattttcgca catagccttt aatcgaagtc ttaacccgtt tgcgcataaa catctttttc
     3001 aatgcatgat taaacaaatc aatttcatcg ttcaaacatt ccgcttttac attcggtgtc
     3061 gtcaacgtca taaaaataaa ttgatactgc ttttcttccg caatagcttg catcataatc
     3121 gacaacatca tcgaatcctt acgagcttta cgccaagcac ataacggaca gaaacgattt
     3181 ttacaaaagt gagcttggac caatttcttt ttctccttat caatcgttgc aataaattct
     3241 aaatatgaac cacagcctgt catcaattca cgcattttgg gagaaattcg attatcacta
     3301 aatgccacca cttttttcaa atttttcttt ttttctcgaa atgttccgtt aatcaaatct
     3361 tgctttttct ttttcatctt gctatactga atctacaaat tttgtataca aaaaaggctg
     3421 aaaagccgat aacaaaaaat agattgctct cctttctagt ttagtttttt tctagtcaat
     3481 taaaactata aaatactagg gaagaaaaag caatcttttt ttttgttctt ccttagagcc
     3541 acaagggata gacccatact atagccccga tttcttcgca gaaatagttg cctatagtat
     3601 caagataaga aaaaacatca aaaaagaggg cgaaaatcgc cccctttttt tcgttttaaa
     3661 accccaaaac ccaaagacat aaaattcgat caatcgacca ctgcattttt aagggggtgt
     3721 acatattttg tacatttaac cgcctgttag atagggctgt taaattttcc cactcattct
     3781 tagtcatgca aacataaaac cgcacccttt aaaaagggcg cccccaaact tcgctaacgc
     3841 taagttggcc aaaaaatgga cttgccattt tttagcaaat gtcagcttaa taggctagtg
     3901 gtttagccgt caactcctta tcctcggcac aaaccgcctc cggtaccgtt gactgcacat
     3961 cgtaactacc actcgatctc atcttcagaa cgctctaatt tatgctgtga gacgttttga
     4021 cgataaaata aggttttctc ctgctctaat acttctaatt cctcagaaag ccccatatcc
     4081 ttttctgcaa gcccaaaacg gatagacaaa cgagtgatcg atttttgaaa tgcgtttttt
     4141 aatcgctcta aacgctggcg taaagagcga ttttcttctt tcagcttttt attttccact
     4201 tgtaaatctg ctaattgttt tctaccagac aaatgacgct cttcttccaa tgcagctaca
     4261 tactcattta attctgtatt ttgctcaagc atctgtaaat attgc
//
