LOCUS       NZ_LR135434             3305 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E8927 plasmid 7.
ACCESSION   NZ_LR135434
VERSION     NZ_LR135434.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4885924
            Assembly: GCF_900639635.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:11:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,819
            CDSs (total)                      :: 2,728
            Genes (coding)                    :: 2,644
            CDSs (with protein)               :: 2,644
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 24 of 84
            Pseudo Genes (incomplete)         :: 55 of 84
            Pseudo Genes (internal stop)      :: 23 of 84
            Pseudo Genes (multiple problems)  :: 16 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135434.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E8927"
                     /db_xref="taxon:1352"
                     /plasmid="7"
     gene            <1..188
                     /locus_tag="EQB53_RS15030"
     CDS             <1..188
                     /locus_tag="EQB53_RS15030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010010243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_127823946.1"
                     /translation="YDSHNLNENSQYSDFSKKHLVIEAEYMHSALCKVLKYLNEGGTDL
                     DIIRAEVMDGIYESRI"
                     /name="hypothetical protein"
     gene            complement(244..660)
                     /locus_tag="EQB53_RS14700"
     CDS             complement(244..660)
                     /locus_tag="EQB53_RS14700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060806723.1"
                     /translation="MRKTSVQKHVTLYPSHVDVLDSIIEKNPDINNYSEAIRFLCMSYE
                     PDINTTTTSNQAKLNAMGKEISIMTEIIAEFADLYLKDTGVLIGTNSKVYQEVKEKIEA
                     KLNPSNRNRPKNHQKGTNKTVTSSNFDPTKFLKR"
                     /name="hypothetical protein"
     gene            complement(663..947)
                     /locus_tag="EQB53_RS14705"
     CDS             complement(663..947)
                     /locus_tag="EQB53_RS14705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002337999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000353844.1"
                     /translation="MDILVRNIDPKFVATIDKRCQELTNKTGEKWSRNKYLKVLIESDF
                     DRQLTTYKKDQFDLLLDKFIAIQTENTQILSEYVYTNNQIIEMLIGGMI"
                     /name="hypothetical protein"
     gene            1314..1538
                     /locus_tag="EQB53_RS14710"
     CDS             1314..1538
                     /locus_tag="EQB53_RS14710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000410576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_225471215.1"
                     /translation="MEKFPYEYFQNLEKLEQAIQAIKFDLTDEKLLKYKNMTPERKRSL
                     EKLMQLVNEDGGISDAAFDAWSEFHGEYN"
                     /name="hypothetical protein"
     gene            1662..1841
                     /locus_tag="EQB53_RS14715"
     CDS             1662..1841
                     /locus_tag="EQB53_RS14715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002322661.1"
                     /translation="MEKDIYKQLTRQIQKEKEKGLLDHLDELELKADEINKNRMSAKEK
                     GIKLKDSSLQSDKS"
                     /name="hypothetical protein"
     gene            2333..2506
                     /locus_tag="EQB53_RS14720"
     CDS             2333..2506
                     /locus_tag="EQB53_RS14720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010625631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002322660.1"
                     /translation="MEEKKEMQSVTIRIPKKLYADYKQALLEQGKIVTYDLRRYMSDVV
                     EESARKETEQKK"
                     /name="hypothetical protein"
     gene            2578..3300
                     /locus_tag="EQB53_RS14725"
     CDS             2578..3300
                     /locus_tag="EQB53_RS14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_002322659.1"
                     /translation="MSKEKARYFTFLLYPESIPDDWEEKLELIGVPIAISPLHDMDEKT
                     NKAKWTSDDVVRNGKHYKKPHYHVIYVAGNPVTTESVRLKIKRALGSKSVNKVQIITTS
                     IQNTYLYLTHESKDAIAKNKHKYKSSDIKLFNNFDIDRYNTLDVEEKDELFEVICEIVE
                     KYQIANILELGKFVRKYGAAYGLISMRVVNKVIASKTGLMRIYFDGAYQARKNGIREIE
                     LDIDLETGEIKEDENGNI"
                     /name="replication protein"
     Typing          2579..3300
                     /name="rep_cluster_2300"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.74"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 attatgacag tcataatcta aatgaaaata gtcagtatag tgatttcagt aaaaagcatt
       61 tagtgattga agctgaatat atgcatagtg ctttgtgtaa ggttttgaaa tatcttaatg
      121 aaggtggaac agatttagat ataattcgtg cagaagtgat ggatggaata tatgaaagta
      181 ggatatgaaa aaatagaata ttgggaaata aaaaacagat aggaataact cctatctgtt
      241 tttttatcgt tttagaaatt tagttgggtc gaaattgcta gaagtgactg ttttgtttgt
      301 tcctttttga tgattctttg gtcgatttcg atttgatgga tttagtttag cttcgatttt
      361 ttctttcact tcttgatata ctttagaatt tgtgccaata agaacgcctg tatcttttag
      421 atataaatca gcgaattctg cgatgatttc agtcatgatg gaaatttctt ttcccatagc
      481 atttagtttt gcctgattgc tggtagtggt cgtgttgata tcgggttcat aactcataca
      541 taaaaagcga atggcttccg agtagttatt gatatctgga tttttttcga tgatggaatc
      601 taaaacgtca acatgactag ggtacaaagt aacatgtttt tggacagaag tttttctcat
      661 ggttatatca ttcctccgat aagcatttca atgatttgat tatttgtgta gacatactcg
      721 cttaatattt gagtattttc tgtttggata gcaataaatt tatcgagcaa taaatcgaat
      781 tggtcttttt tgtaagtcgt aagttgacgg tcaaaatcac tttcgattaa aacttttaga
      841 tatttatttc gactccattt ttctcctgtt ttattcgtga gttcttggca acgtttgtct
      901 attgttgcaa caaactttgg atcaatattc cgaactaaaa tgtccataaa aaatctcctt
      961 ttgcaattat gtataattta tgtatatcat acaaatacta tatttgtata gctgtttttt
     1021 gccaaaatac tatacataag ctatccacga tggcgaaaaa gtgatatcaa atttttttct
     1081 gagaaacgtg ataggcacag cctatctacc cacttttttt agaaagtggg tacacgtttc
     1141 cttatgctct ttaaaattcg gggggggagt gctgcacgtg tgatcgataa ccaaatttaa
     1201 aaatgcacga tcaaaaattt atttagtttt tcaaacgaca ttttttttga gagtatagac
     1261 ggcaaagaag tgattttatt tctagaaaaa ttgtgagact ggagaaagaa aaaatggaaa
     1321 aatttcctta cgaatatttt caaaacttag aaaaattaga gcaagcaatt caagcaatca
     1381 agttcgattt aacagacgaa aaattgttga aatataaaaa tatgacgccc gaaagaaaac
     1441 gatcgttgga aaaattaatg caactagtga acgaagacgg cggaatttca gacgcagctt
     1501 ttgacgcatg gagcgaattt catggagaat ataattaagt gggtttaaat ggctctaaaa
     1561 tcgcttctaa gagtttttta gcttggacca atgaaataca ccaaaaacta aataaaacgt
     1621 cttaaatcga ataataatag cttttaagga ggcgatgggg gatggaaaaa gatatttata
     1681 aacaattgac ccgacaaatt caaaaggaaa aagaaaaagg cttactagat catttagatg
     1741 aattagaact aaaagctgat gaaatcaata aaaacagaat gtcagcaaaa gaaaaaggta
     1801 taaaacttaa agattcgtcg ttgcaaagcg ataaaagcta gataacgtgc ggtcaacggt
     1861 aaatcgaatt agagacgctt agagaggcta ataagccctc ttagcgtctc tttgaggctt
     1921 taaggagttg acggctataa acaaaaccca aaagctggaa acacaagaag gtgaccatag
     1981 ggaacgttct tgacgcctta acggcgagtg gaaagttttt ggggtgcctt ttttcaaaaa
     2041 ggtacggtct tgatttgccg agcgatagcg ctggaaaatt tttggaaaaa atttggaatt
     2101 tggaaaatct gggggggcta ctacgacccc ccataaagtg ccgagtgcca attttagaaa
     2161 aaaacctatt taagccttac tctcgcaagg gttacagcga tcaaaaaaaa atcaacaaac
     2221 gccaacaaaa ttactgtttt gttgataaaa atgtaattct ttgtaatgct tgactatgta
     2281 tatagatttc attataatta tatagaatta tatataagga gggtgtctgg tgatggaaga
     2341 aaaaaaagaa atgcaaagtg tgactatacg tattcctaaa aagttatatg ctgattataa
     2401 acaagcttta ttagaacaag gaaaaatcgt gacttatgat ttaagaagat atatgagtga
     2461 tgttgtagaa gaatctgcga gaaaggaaac agaacaaaaa aaataagcga aaactcgcgt
     2521 ttttttgaaa ggaaacgagt tttcgctatc ggttttctgt cgaggtgatt atagcaaatg
     2581 agcaaagaaa aggctagata cttcactttt ttactatatc cagaaagtat tcctgatgat
     2641 tgggaagaaa aattggaatt aataggcgtg cctattgcga ttagtccttt gcatgatatg
     2701 gacgaaaaaa caaataaagc aaaatggacg agtgatgatg tcgttaggaa tggtaagcat
     2761 tataaaaaac cgcattatca tgtaatttat gtagcaggaa atcctgtgac tactgaaagt
     2821 gttcgattga aaattaaacg agctttggga agcaaaagtg ttaataaggt tcagattata
     2881 actacaagta ttcaaaatac gtacttgtat ttaacgcatg aatcaaaaga tgctattgcc
     2941 aaaaataaac acaaatacaa aagttctgat ataaaactat ttaacaattt tgatattgat
     3001 cgttataaca cgcttgatgt tgaagaaaaa gatgaacttt ttgaagtgat ctgtgaaatt
     3061 gttgagaaat atcaaatagc taatatttta gagttaggta aattcgtgag gaaatatggg
     3121 gctgcgtatg gcttaattag catgagagta gtcaacaagg ttattgcgtc taaaacaggt
     3181 ttgatgagaa tttattttga tggagcatat caagcgcgca aaaatggtat tcgagagatt
     3241 gaattagata ttgatttaga aactggggag ataaaggagg atgaaaatgg aaatatttga
     3301 tgaat
//
