LOCUS       NZ_LR135400             2947 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E8290 plasmid 7.
ACCESSION   NZ_LR135400
VERSION     NZ_LR135400.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4885694
            Assembly: GCF_900639605.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:03:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,222
            CDSs (total)                      :: 3,129
            Genes (coding)                    :: 3,022
            CDSs (with protein)               :: 3,022
            Genes (RNA)                       :: 93
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 29 of 107
            Pseudo Genes (incomplete)         :: 75 of 107
            Pseudo Genes (internal stop)      :: 21 of 107
            Pseudo Genes (multiple problems)  :: 14 of 107
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135400.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E8290"
                     /db_xref="taxon:1352"
                     /plasmid="7"
     gene            complement(485..625)
                     /locus_tag="EQB51_RS16805"
     CDS             complement(485..625)
                     /locus_tag="EQB51_RS16805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002326822.1"
                     /GO_function="GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="WP_002322683.1"
                     /translation="MSDSIEKMTLKKLADELGVSKNTVRNQLVNSGFDLAQYKEKNAVV
                     N"
                     /name="DeoR family transcriptional regulator"
     gene            complement(622..1596)
                     /locus_tag="EQB51_RS16810"
     CDS             complement(622..1596)
                     /locus_tag="EQB51_RS16810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002342725.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_002337993.1"
                     /translation="MSKRGTIINEWEKLNRISNRRLNAQTMCTPLKMQWSIDRITIVGT
                     LRENIYYHTPHDVLILDFEQLMRLNEGNGYLKAVGNNGWQLLDQHEENIAYIEILKFQE
                     GKGRIDFNPNKISQFLAGSMKNFIHDLFLEPHFSRADIACDIIDVPDDFITQYRVVDPV
                     SFKPIYGRSGKLETAYWGSRASERQIRMYNKKLEQERKRKVVPKEIDTWWRLELQLRRG
                     KATDWHAMVHESLDSFASPHYLPEDVKVTDRMMITALITEHSYWGQIHRNSKYKYRELL
                     KQESQNDELTNHLRETFSESADDLKRELDTWLQGLDVTEVGAE"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            2396..2677
                     /locus_tag="EQB51_RS16815"
     CDS             2396..2677
                     /locus_tag="EQB51_RS16815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002347307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002347307.1"
                     /translation="MDILVRKIDSKVIAKIDKRCQELTNKTGKKWSRNRYLKVLIENDF
                     DHALMHYKKDQFDLLLEKFIAIQEKNTETLNEYVRTNNQLIETLIGGR"
                     /name="hypothetical protein"
     gene            2679..>2947
                     /locus_tag="EQB51_RS16820"
     CDS             2679..>2947
                     /locus_tag="EQB51_RS16820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_127822615.1"
                     /translation="MRKTSVQKHVTLYPSHVDVLDSIIERNPDINNYSEAIRFLCMSYE
                     PDTNTTTTSNQAKLNAMGKEISIMSEIIAEFADLYLKDTGILIGT"
                     /name="hypothetical protein"
     Typing          complement(626..1572)
                     /name="rep_cluster_943"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.899"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aaattctaaa gtgtatcaag aaacgaaaga aaaaattgaa aaacaactta atccctccaa
       61 acgaaatcaa ccaaaaaatc gtcaaaaaga aaccaatcaa acatttactt ctaaaaattt
      121 cgacccaaca aattttctaa aaagataaaa aataaaccag gagatttaaa ttcctggttt
      181 attttttggg taggatcacc atcttaatag caacatttac aataagatag taaccaattg
      241 aatgaaaaaa acgaatttca gaagaaataa cagaaaaaaa gataaaaaca aaaaaattat
      301 aaatacatga tttgaattca taatcgtaaa aaaagctgct cgtacgagca gctaaataag
      361 aaaaagattg gtatgtttta aggataaaat aagtataaca aatttttcac atagagcaaa
      421 gggggcgaaa atcgccccct ttttttcgtt ttaaaacccc aaaacccaaa gacataaatt
      481 tcggtcaatt gaccactgca tttttttctt tatactgagc aaggtcaaat cccgaattga
      541 ccagttgatt gcgcaccgta tttttcgata cacccaattc atcagcaagt ttttttaggg
      601 tcattttttc tatcgaatca ctcattcagc acctacttcc gtcacatcaa gtccttgaag
      661 ccatgtatct aattctcgtt tcaaatcatc tgccgactcc gaaaatgttt ctcgcaaatg
      721 attcgtcaac tcatcatttt gactttcttg ctttaacaat tcacgatatt tatattttga
      781 atttctatga atttgccccc agtaactatg ttccgttata agagcagtaa tcatcattct
      841 gtcagttact ttcacatctt ctggcaaata gtgaggactt gcaaagctat ctaaactttc
      901 atgaaccatt gcatgccaat cagttgcttt cccccttcgc aattgcaatt ctagtcgcca
      961 ccaagtatcg atttctttcg gaacaacttt ccgttttctt tcttgttcca attttttgtt
     1021 atacatccga atctgtcgtt cactagcacg acttccccaa tatgctgttt ccagtttccc
     1081 agaccgaccg taaattggtt tgaaagaaac aggatcaacc acccgatatt gggtaatgaa
     1141 atcatctggc acgtcaataa tgtcacaagc aatatctgca cgtgagaaat gtggttctaa
     1201 aaataaatca tggataaagt tcttcatcga gcccgccaga aattggctaa ttttattggg
     1261 gttaaagtca atccgccctt ttccctcttg aaacttaaga atctcaatat aagctatatt
     1321 ttcctcatgt tggtctagta attgccagcc attatttcca accgctttta aatatccgtt
     1381 accttcgttt agacgcataa gctgttcaaa atctaaaatc aacacatcat ggggagtgtg
     1441 ataataaata ttttccctta atgtaccaac aatggtaatt cggtcaattg accattgcat
     1501 ttttaagggg gtgcacatag tttgtgcatt taaccgcctg ttagatatgc ggttaagttt
     1561 ttcccactca tttatgatcg tgccacgttt actcaaattt tgttcctcct caaagaaaaa
     1621 agagattttt ggaaagaatt tccagagttc acgtaactct aaaaatccat atccaaaaat
     1681 ctctagcttg aagaaaccta aaaatattcg tataatgaat ttgagttacg gaactaggtg
     1741 agtagtttcc gtaattagcc gaagggtgct tccaacaccg ttcggctttt attttgctct
     1801 tttttctcgt tttctttgat tatagcactc ctcttaaaaa aataaaaaga cctcagggaa
     1861 tttcattccc cgaacccctt gagcctcctc ctgccgaaat tatttcacgc ttccgctctt
     1921 catttcattc agttctcggc ttgcacaatc taacacgccg tttcgctacc agtcgcctta
     1981 caggctccat tctcgcttct cttacgtgtt ttaacgattg tgccgataac taaacgaaat
     2041 gaacgctaaa acgtcttaga acgcaaaata cgcgcttata aaatcatttc atcttgatta
     2101 catgcccgtc ataatcgttc agtttagttt cattttcgta aacttttttt atttttacga
     2161 acagaaaaaa gtcgcacatc accattttat aaagagcata aggaaacgtg tacccacttt
     2221 ctaaaaaaag tgggtagata ggctgtgcct atcacgtttc tcagaaaaaa atttgatatc
     2281 actttttcgc catcgtggct agcttatgta tagtatttta gcaaaaaaca gctatacaaa
     2341 tactatattc gtatgatata cataaattat acacaaatgc gaaaggagtt tttctatgga
     2401 cattttagtt cggaagatcg attcaaaggt tattgcaaaa atagacaaac gttgccaaga
     2461 actcacaaat aaaactggca aaaaatggag tcgaaatcgc tacttaaaag tcctaatcga
     2521 aaacgatttt gaccacgcac ttatgcatta caagaaagat caattcgatt tattactcga
     2581 aaaatttatc gctattcaag aaaaaaatac tgaaacgctg aatgaatatg ttcgtacaaa
     2641 caaccaactc attgaaacac ttatcggagg aagataacat gagaaaaact tctgttcaaa
     2701 aacacgttac cctttatccc agtcacgtgg acgttttaga ttccattatc gaaagaaatc
     2761 cagatatcaa caattactcg gaagccattc gttttttatg tatgagttat gaacctgata
     2821 ccaacacgac tactaccagc aatcaagcca aactaaatgc tatgggaaaa gaaatttcca
     2881 tcatgtccga aatcattgca gaatttgctg atttatatct aaaagataca ggtattctta
     2941 ttggcac
//
