LOCUS       NZ_LR135382             3647 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E8172 plasmid 11.
ACCESSION   NZ_LR135382
VERSION     NZ_LR135382.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4885602
            Assembly: GCF_900639555.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:05:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,937
            CDSs (total)                      :: 2,846
            Genes (coding)                    :: 2,748
            CDSs (with protein)               :: 2,748
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 31 of 98
            Pseudo Genes (incomplete)         :: 59 of 98
            Pseudo Genes (internal stop)      :: 31 of 98
            Pseudo Genes (multiple problems)  :: 17 of 98
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135382.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E8172"
                     /db_xref="taxon:1352"
                     /plasmid="11"
     gene            complement(73..1479)
                     /locus_tag="EQB36_RS15385"
     CDS             complement(73..1479)
                     /locus_tag="EQB36_RS15385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016173818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_127817631.1"
                     /translation="MGFSISFKKGTKNTSISHNNRELTDSQKINDWHKHIDFTKSDENI
                     YLEQINIREKYEELFGEAVEKYNAKQKRADRKIEDYLAKVRKDKKLEPQREFIVQIGTL
                     DDFRTTRDDGSSTGISEQQAEQNRVIANKILVEYFKEFKERNPNLSVYNAVIHNDEVSP
                     HLHLNIVPVAEGYKRGVQKQPSFNKALQQQGLRADKENGRVIWNNFRNQEVESIERLMA
                     DFGWERELVGTNKIKDVHEYKEIMSEISELRQTAVKERESVSDELGYISRQREENEREK
                     ALVASERAKIEEEKKNMLNVKKEMAVIFQKDMVPLESFKRLPDGSYHLSGNDFVDLYQR
                     ATRATNAKRNADNMSEQYLQMLEQNTELNEYVAALEEERHLSGRKQLADLQVENKKLKE
                     ENRSLRQRLERLKNAFQKSITRLSIRFGLAEKDMGLSEELEVLEQEKTLFYRQNVSQRK
                     LERSENEIEW"
                     /name="plasmid recombination protein"
     gene            complement(1701..2063)
                     /locus_tag="EQB36_RS15390"
     CDS             complement(1701..2063)
                     /locus_tag="EQB36_RS15390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016173819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_127817632.1"
                     /translation="MGMTLADIKAQEEKLKKEQAKLRQQKKRLIEKENAAMGKALRKRF
                     GFESFADFERWLSSISDDQQHEKTVDNEWLADEKSAPSERDYPDESDGLFGVIPNKKIQ
                     MSESKFTSIFNDVNLR"
                     /name="hypothetical protein"
     gene            complement(2136..3125)
                     /locus_tag="EQB36_RS15395"
     CDS             complement(2136..3125)
                     /locus_tag="EQB36_RS15395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002349057.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_127817633.1"
                     /translation="MTDKKQDLINGTFKMKKKNLQKVIAFGGGRFSERTVESMASCGSY
                     LEFIATADKEKKKLIQANFCKNRFCPLCSWRKARKDSLMLSIMMQAIAEEKNYQFIFMT
                     LTTPNVKADKLNEEIDLFNHALSKMFRRKRVMGAIKGYVRKLEITYNKKRNDYNPHFHL
                     ILAVNKSYFTDPKYYIKQAEWLDLWRDVTGKTGINPDGTDEISQLDIRKVKGFQQDKAV
                     QELAKYSAKDFEMTESQEVFDTFYHAMKGRQLITFNGVFKEYKKKYEAGEFDHYKKKDE
                     NEYFWFLTASWMKKESSYAINLRELTPDERKFFSGGLVEEKPVEGENE"
                     /name="protein rep"
     Typing          complement(77..1479)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.077"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gctagtggtt tagccgtcaa ctccttatcc tcggcacaaa ccgcctccgg taccgttgac
       61 tgcacatcgt ggctaccact caatctcatt ctcagaacgc tctaatttac gctgtgagac
      121 gttttgacga taaaataagg ttttctcctg ctctaatact tctaattcct cagaaagccc
      181 catatccttt tctgcaagac caaaacggat agacaaacga gtgatcgatt tttgaaatgc
      241 gttttttaat cgctctaaac gctggcgtaa agagcgattt tcttctttca gctttttatt
      301 ttccacttgt aaatctgcta attgttttct accagacaaa tgacgctctt cttccaatgc
      361 agctacatac tcatttaatt ctgtattttg ctcaagcatc tgtaaatatt gctcactcat
      421 gttatcagca tttctcttgg catttgttgc tctcgtagct cgttgataca aatcaacaaa
      481 atcattccca gataaatgat acgaaccatc aggaagcctc ttgaaacttt ctaaaggaac
      541 catatctttt tggaaaatga ccgccatctc tttttttaca ttcagcatat ttttcttctc
      601 ttcttcaatc ttcgctctct cagaagccac cagagccttt tctcgctcat tttcttctct
      661 ttgcctagaa atatacccca actcatcaga aacgctctca cgctctttta cggccgtttg
      721 acgcaattct gaaatctcgc tcatgatttc tttatattcg tgaacatctt tgattttgtt
      781 agtaccgact aactcacgct cccaaccaaa atctgccatc aaacgttcaa ttgactcaac
      841 ttcctgattc ctaaaattat tccaaatcac tcgaccattc tctttatctg ctcgtaaacc
      901 ctgctgttgc aaggctttgt taaaacttgg ttgcttttga acaccccgtt tatacccttc
      961 agcaacagga acaatattca aatgcaggtg cggacttact tcgtcattat gaataacagc
     1021 attgtagacg gataaattag gattccgttc tttaaattct ttgaaatact caactaaaat
     1081 tttgttggca atcactcgat tttgttctgc ttgttgttcc gatatgccag tagaagaacc
     1141 atcatcacga gtagtacgaa aatcatcaag agtaccaatt tgcacgataa attctcgctg
     1201 tggttccaat tttttatcct tgcgaacctt tgctaaatag tcctcgattt ttctatcggc
     1261 tcttttctgc tttgcattat atttttctac ggcttcaccg aataattctt catatttttc
     1321 acgaatattt atttgttcca aatagatatt ttcatccgat tttgtgaaat caatatgctt
     1381 atgccagtca ttgatttttt ggctatcagt taactcacga ttattatgag aaatgcttgt
     1441 attctttgtt ccctttttga acgaaatact aaaccccaag ttaaacccct ccttcgcgct
     1501 gtcgctaata aaaagagtgt aaacctttct gttactcttt gtcaaagagt aacgttttcc
     1561 taattgtgac atgactgtca caattccaaa cgctctccga gggatttcgc tgtcacaagt
     1621 gacaacgaaa aaaggagccg aaagcgtatc acgctctcaa ctccttttac gctttatttt
     1681 gcttcacgca aaataatcgc ttatcgtaaa ttcacgtcat taaatattga cgtaaattta
     1741 ctctcactca tctgaatttt cttattcggt atcactccga ataagccgtc agattcatcg
     1801 ggataatctc gttcgcttgg cgctgatttt tcatcagcaa gccactcatt atccactgtt
     1861 ttttcgtgtt gctgatcgtc agaaattgac gatagccacc gctcaaaatc agcaaaagat
     1921 tcaaacccaa aacgcttgcg aagagccttg cccattgcag cattttcttt ctcaatcaat
     1981 cgtttcttct gttggcgaag tttcgcctgt tcttttttta atttttcttc ttgcgcttta
     2041 atatctgcta aagtcatccc cataaactac atcccctttt ctttggaatt aataacggaa
     2101 atttggttta atcgttattt tatcaggtga atcagtcatt cattttcccc ctcaacaggt
     2161 ttttcctcaa ctaacccacc gctaaaaaat ttcctctcat caggcgtcaa ttctcggaga
     2221 tttattgcat acgacgattc ctttttcatc catgaagcag tcaaaaacca gaaatattcg
     2281 ttctcgtctt ttttcttgta gtgatcgaac tcgcctgctt cgtatttctt cttgtactcc
     2341 ttgaagaccc cgttaaacgt gattaactgg cgccctttca tagcatggta aaacgtatca
     2401 aagacttctt ggctctcggt catttcaaag tctttcgcag aatacttggc aagttcctgt
     2461 accgctttgt cttgttggaa tcctttgacc tttcgaatat ccaactgact gatttcgtct
     2521 gtaccatcag gattgattcc cgttttccca gtcacatcac gccacaaatc aagccattct
     2581 gcctgtttaa tataatattt agggtcagta aaatacgact tgttcaccgc caaaatcaaa
     2641 tgaaaatgcg ggttgtagtc atttcgtttc ttgttgtacg tgatttccaa tttccggaca
     2701 tagcctttaa tcgcacccat gacccttttc ctacgaaaca ttttggacaa cgcatgatta
     2761 aataaatcaa tttcttcgtt tagcttgtct gcttttacat tgggcgttgt tagcgtcata
     2821 aaaataaact ggtaattctt ttcttcagcg attgcctgca tcataatcga cagcatcaaa
     2881 gaatctttac gagctttgcg ccatgaacac agcggacaaa aacgattttt acagaaattc
     2941 gcctgaatca atttcttttt ctccttgtca gcggtggcga taaattccaa atatgaaccg
     3001 cagctagcca tactctccac tgtcctttcc gaaaagcgcc cgcccccgaa agcaatcacc
     3061 ttttgtaaat ttttcttttt cattttgaat gtcccattta ttaaatcttg ttttttgtct
     3121 gtcatattga tatactgaac ctacaatttt gtataaaaag gctgaaaagc cgataacaaa
     3181 aaatagattg ctctccttaa tttggttggt ttttacttag acactaaaag cttaatccaa
     3241 tatgcaagga aaagcaatct ttttttgtac aatcctttat atatcaaggt caaaggcata
     3301 ctattagttc cgattttctg ccgaaaatag ttacctaata gtatcaagat aagaagaaac
     3361 atcaaaaaaa gaggtcgaaa tcgacctctt ttttctcgtt tcaaacccca aaactcaaaa
     3421 acccacttct gcataaaatt tggtcaattg accactgcat ttttaagggg gtgtacatat
     3481 tttgtacatt taaccgcctg ttagaggggg ctgttaaatt ttcccactca ttcttagtca
     3541 tgcaaacata aaaccgcacc ctttaaaaag ggcgccccca aacttcgcta acgctaagtt
     3601 ggccaaaaaa tggactggcc attttttagc aaatgtcagc ttaatag
//
