LOCUS       NZ_LR135363             1928 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E7948 plasmid 7.
ACCESSION   NZ_LR135363
VERSION     NZ_LR135363.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4885488
            Assembly: GCF_900639585.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 02:54:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,980
            CDSs (total)                      :: 2,889
            Genes (coding)                    :: 2,768
            CDSs (with protein)               :: 2,768
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 53 of 121
            Pseudo Genes (incomplete)         :: 66 of 121
            Pseudo Genes (internal stop)      :: 32 of 121
            Pseudo Genes (multiple problems)  :: 24 of 121
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135363.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E7948"
                     /db_xref="taxon:1352"
                     /plasmid="7"
     gene            complement(<546..728)
                     /locus_tag="EQB40_RS15625"
                     /pseudo=""
     CDS             complement(<546..728)
                     /locus_tag="EQB40_RS15625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002313295.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(928..1893)
                     /locus_tag="EQB40_RS15630"
     CDS             complement(928..1893)
                     /locus_tag="EQB40_RS15630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305967.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_002305967.1"
                     /translation="MSKKGIIVNEWEKLNRISNRRLSVDDKVHPLKLSWSIDRITIVGK
                     LNDTIAYWTQNGVVFVDFEQLMRLNENQGYLKSVGTNGWQLFDQYGEDIAYIEMLKFHP
                     DKGRIDFNPNKIGEFLKGSMKQFIHDLFLDAHFSRADIACDILGVPDDFITQYRIVDPV
                     SFKPIYGRSGKLETAYWGSRASERQVRMYNKKLEQERKKQIVPKEIETWWRIEMQLRRG
                     KATDWHAMVRESLDSFASPHYLPGDVKPVDRIMIKGLNQDHSEWAYISRNLKYRLRKLL
                     KEESQNDELTNHLRETFKESANDLKIELDTWLLGLDVTEK"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          complement(929..1695)
                     /name="rep_cluster_1968"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gaaagaattt ccagagttca cgtaactcta aaaatccaca tccaaaaatc tctagcttga
       61 agaaacctaa aaatattcgt ataatgaact tgagttacgg aactaggtga agtagtttcc
      121 gtaaaggtcg agagtgcgtc aacactgctc gactattttt ttactctttt ttctcatttt
      181 ctttgattat agcactcctc tagaaaaaat aaaaagacct cagggaattt cattccccga
      241 accccttgag cctcctcctg ccgaaataga atggcgctgc cagcatttat ttcgttcagc
      301 tatcggctac acaatctaac acgaccgttc cgctaccagt cgccttacag gctccatttt
      361 cgctcctcta acgtgtttca ccgattgtgc cgataactaa acgaaataaa cgctaaaacc
      421 gctcagaacg caaaatatgc cattttagag ctattgtaga aaatatagtt tgaaatgcaa
      481 ttttcttctt tcagcttttt atttcccact tgtaaatctg ctaattattt tctaccagac
      541 aaactattga ttttttggct atcagttaac tcacgattat tatgagaaat gcttgtattt
      601 tttgttccct ttttgaacga aatactaaac cccaagttaa acccctcctt cgcgctgtcg
      661 ctaataaaaa gagtgtaaac ctttctgtta ctctttgaca aagagtaaca ttttcctaat
      721 tgtgacatgg ctgtcacaat tccaaatgct ctccgagggt attcgctgtc acaagtgaca
      781 acgaaaaaag gagccgaaag cgtgtcacgc tctcaactcc ttttacgctt tattttgctt
      841 cacgcaaaat aatcgcttat cgtaaactca cgtcattaaa cattgacgta aatttactct
      901 cactcatctg acttttctta ttcggtatca cttctctgtc acgtccaaac ccaaaagcca
      961 cgtgtctaat tctattttca agtcgtttgc agattcctta aacgtctctc gtaaatgatt
     1021 cgtcaactca tcgttttggc tttcttcttt caacaatttg cgcaatctat atttcaaatt
     1081 tctgctaata tacgcccact ctgaatgatc ttgattcagc ccttttatca taattctatc
     1141 aacaggtttt acatctccag gcaagtaatg aggacttgca aagctatcta aactttcccg
     1201 aaccatcgca tgccaatctg ttgctttgcc acgtcttagc tgcatttcta tacgccacca
     1261 tgtttcgatt tcttttggta caatctgttt ttttcgttcc tgttcaagct ttttgttgta
     1321 catccgcact tgtcgctcgc tggcacgact accccagtac gctgtttcta atttgccaga
     1381 acggccataa attggcttaa aagacacagg gtcaacgatt cgatactggg taataaaatc
     1441 atcaggaaca ccgagaatat cgcaagcaat atctgcacgt gagaaatgcg catccagaaa
     1501 caaatcatga atgaattgtt tcatcgaccc ctttaaaaac tcgccaattt tatttggatt
     1561 aaaatcaata cgacctttgt cagggtgaaa ttttaacatt tcgatatagg cgatatcttc
     1621 tccatattgg tcaaataatt gccaaccatt tgtaccaacc gacttcaaat acccttgatt
     1681 ttcattcaaa cgcattaatt gctcaaaatc gacaaacaca actccatttt gcgtccaata
     1741 agctatggta tcattcagtt ttccgacgat tgtaattcga tcgattgacc aacttaattt
     1801 tagggggtgt accttatcgt caacacttaa ccgcctgtta gaaatacggt taagtttttc
     1861 ccactcattt acgattatgc cttttttact caaaaatagc tcctcctcaa cgaaaaaaga
     1921 gattcttg
//
