LOCUS       NZ_LR135202             1928 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E6055 plasmid 6.
ACCESSION   NZ_LR135202
VERSION     NZ_LR135202.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4884801
            Assembly: GCF_900639345.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:21:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,007
            CDSs (total)                      :: 2,916
            Genes (coding)                    :: 2,797
            CDSs (with protein)               :: 2,797
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 47 of 119
            Pseudo Genes (incomplete)         :: 71 of 119
            Pseudo Genes (internal stop)      :: 26 of 119
            Pseudo Genes (multiple problems)  :: 22 of 119
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135202.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E6055"
                     /db_xref="taxon:1352"
                     /plasmid="6"
     gene            complement(363..1328)
                     /locus_tag="EQB61_RS15750"
     CDS             complement(363..1328)
                     /locus_tag="EQB61_RS15750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305967.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_002305967.1"
                     /translation="MSKKGIIVNEWEKLNRISNRRLSVDDKVHPLKLSWSIDRITIVGK
                     LNDTIAYWTQNGVVFVDFEQLMRLNENQGYLKSVGTNGWQLFDQYGEDIAYIEMLKFHP
                     DKGRIDFNPNKIGEFLKGSMKQFIHDLFLDAHFSRADIACDILGVPDDFITQYRIVDPV
                     SFKPIYGRSGKLETAYWGSRASERQVRMYNKKLEQERKKQIVPKEIETWWRIEMQLRRG
                     KATDWHAMVRESLDSFASPHYLPGDVKPVDRIMIKGLNQDHSEWAYISRNLKYRLRKLL
                     KEESQNDELTNHLRETFKESANDLKIELDTWLLGLDVTEK"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          complement(364..1130)
                     /name="rep_cluster_1968"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttaactcacg attattatga gaaatgcttg tattttttgt tccctttttg aacgaaatac
       61 taaaccccaa gttaaacccc tccttcgcgc tgtcgctaat aaaaagagtg taaacctttc
      121 tgttactctt tgacaaagag taacattttc ctaattgtga catggctgtc acaattccaa
      181 atgctctccg agggtattcg ctgtcacaag tgacaacgaa aaaaggagcc gaaagcgtgt
      241 cacgctctca actcctttta cgctttattt tgcttcacgc aaaataatcg cttatcgtaa
      301 actcacgtca ttaaacattg acgtaaattt actctcactc atctgacttt tcttattcgg
      361 tatcacttct ctgtcacgtc caaacccaaa agccacgtgt ctaattctat tttcaagtcg
      421 tttgcagatt ccttaaacgt ctctcgtaaa tgattcgtca actcatcgtt ttggctttct
      481 tctttcaaca atttgcgcaa tctatatttc aaatttctgc taatatacgc ccactctgaa
      541 tgatcttgat tcagcccttt tatcataatt ctatcaacag gttttacatc tccaggcaag
      601 taatgaggac ttgcaaagct atctaaactt tcccgaacca tcgcatgcca atctgttgct
      661 ttgccacgtc ttagctgcat ttctatacgc caccatgttt cgatttcttt tggtacaatc
      721 tgtttttttc gttcctgttc aagctttttg ttgtacatcc gcacttgtcg ctcgctggca
      781 cgactacccc agtacgctgt ttctaatttg ccagaacggc cataaattgg cttaaaagac
      841 acagggtcaa cgattcgata ctgggtaata aaatcatcag gaacaccgag aatatcgcaa
      901 gcaatatctg cacgtgagaa atgcgcatcc agaaacaaat catgaatgaa ttgtttcatc
      961 gaccccttta aaaactcgcc aattttattt ggattaaaat caatacgacc tttgtcaggg
     1021 tgaaatttta acatttcgat ataggcgata tcttctccat attggtcaaa taattgccaa
     1081 ccatttgtac caaccgactt caaataccct tgattttcat tcaaacgcat taattgctca
     1141 aaatcgacaa acacaactcc attttgcgtc caataagcta tggtatcatt cagttttccg
     1201 acgattgtaa ttcgatcgat tgaccaactt aattttaggg ggtgtacctt atcgtcaaca
     1261 cttaaccgcc tgttagaaat acggttaagt ttttcccact catttacgat tatgcctttt
     1321 ttactcaaaa atagctcctc ctcaacgaaa aaagagattc ttggaaagaa tttccagagt
     1381 tcacgtaact ctaaaaatcc acatccaaaa atctctagct tgaagaaacc taaaaatatt
     1441 cgtataatga acttgagtta cggaactagg tgaagtagtt tccgtaaagg tcgagagtgc
     1501 gtcaacactg ctcgactatt tttttactct tttttctcat tttctttgat tatagcactc
     1561 ctctagaaaa aataaaaaga cctcagggaa tttcattccc cgaacccctt gagcctcctc
     1621 ctgccgaaat agaatggcgc tgccagcatt tatttcgttc agctatcggc tacacaatct
     1681 aacacgaccg ttccgctacc agtcgcctta caggctccat tttcgctcct ctaacgtgtt
     1741 tcaccgattg tgccgataac taaacgaaat aaacgctaaa accgctcaga acgcaaaata
     1801 tgccatttta gagctattgt agaaaatata gtttgaaatg caattttctt ctttcagctt
     1861 tttatttccc acttgtaaat ctgctaatta ttttctacca gacaaactat tgattttttg
     1921 gctatcag
//
