LOCUS       NZ_LR135196             1068 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E4438 plasmid 6.
ACCESSION   NZ_LR135196
VERSION     NZ_LR135196.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4884718
            Assembly: GCF_900638825.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 02:54:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,905
            CDSs (total)                      :: 2,815
            Genes (coding)                    :: 2,731
            CDSs (with protein)               :: 2,731
            Genes (RNA)                       :: 90
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 42 of 84
            Pseudo Genes (incomplete)         :: 47 of 84
            Pseudo Genes (internal stop)      :: 21 of 84
            Pseudo Genes (multiple problems)  :: 19 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135196.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E4438"
                     /db_xref="taxon:1352"
                     /plasmid="6"
     gene            complement(40..996)
                     /locus_tag="EL354_RS15755"
                     /pseudo=""
     CDS             complement(40..996)
                     /locus_tag="EL354_RS15755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002326835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
ORIGIN
        1 tttttagaaa aagcagtcgg actttctaaa agaagttcac tattcgatcc tgtcgatgat
       61 ttcttcagga aaatcgtcta tttgcttgtc aattttgctg tctttgtatt tctcttcttg
      121 gatagtcaac aaaatctttg taagattccc ccagtctact gctcttggcg gatcgagcca
      181 aaccactact tgagatgcac tttcttcata tagattattc ctattcgtga ttataacatc
      241 cgggaactca ggctttcctg cctctatcac ttccgtgttc agattaatgt acaagcttaa
      301 atttttcttg ataaattgat tataggcagc accataagaa aaatcgatga tgatctttac
      361 tggttcagaa atcagttgaa tgggtatgtg attgatcaat aataataaat aactgaaaaa
      421 aagaaaaaat ttatcttgaa gcaactcttt gcgttttgac gttagatcat ttatatactc
      481 tatcaaatag caataaaatg ctggatagtt ttctctaaaa aaagaaacat caagtggaaa
      541 ttcatcagct ttattaatag tgtaatgcaa aagtttaaaa tgtattttgg ttaactctct
      601 tcggatcaat tggctcgtct cttctcgcaa cagattaaac tgattttcaa aactttcaat
      661 gaatcattca ttcaaccatt cgattgtttc atcttcattt tttctcaagt atttttgatc
      721 caatttatca tgaagataaa gccaagagag tgtcttattg ataaaaataa cggatttttc
      781 tcctaatact ccttttaagt ggtaaaatcc tatatccgaa aaaaatagcg actgattgct
      841 agcaatatct aaagaatcag cttgttcagc caacaggttg attgctaaaa agtggaataa
      901 tttctttttt tcataagcag acagaggata atactgtttt aaatctttta acattttttc
      961 tgtttttata attataggta gcgtatacaa ttccacaaaa cttatctctg ttgagttaaa
     1021 aagattatat aaaaaaagcc gaatgttttt aggattccct gtcaactt
//
