LOCUS       NZ_LR135178             2056 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Enterococcus faecium isolate E4402 plasmid 5.
ACCESSION   NZ_LR135178
VERSION     NZ_LR135178.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4884683
            Assembly: GCF_900638805.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Arredondo-Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2018) UNIVERSITY MEDICAL CENTER UTRECHT,
            Heidelberglaan 100, 3584 CX Utrecht, Netherlands
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:07:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,819
            CDSs (total)                      :: 2,729
            Genes (coding)                    :: 2,663
            CDSs (with protein)               :: 2,663
            Genes (RNA)                       :: 90
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 25 of 66
            Pseudo Genes (incomplete)         :: 37 of 66
            Pseudo Genes (internal stop)      :: 17 of 66
            Pseudo Genes (multiple problems)  :: 10 of 66
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR135178.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /isolate="E4402"
                     /db_xref="taxon:1352"
                     /plasmid="5"
     gene            128..385
                     /locus_tag="EL348_RS14780"
     CDS             128..385
                     /locus_tag="EL348_RS14780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002377879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002299941.1"
                     /translation="MPKETTINVEQLEKLLESYSNDFIELTGGKVEETTDLFDLLLTNI
                     LELNSEEQKEHKGKLIAPSYRKVAKSAVPTGFLTKQPYIF"
                     /name="hypothetical protein"
     gene            complement(521..1123)
                     /locus_tag="EL348_RS14785"
     CDS             complement(521..1123)
                     /locus_tag="EL348_RS14785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002323513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_002323513.1"
                     /translation="MTSRKTKDERTRNWTFVVYPESAPENWREFLDELHVPWVESPLHD
                     KDVNPDGELKKPHWHVLIMFSGKKTYDQIREITQKLRSPNPQKCANAKGMVRYFAHMDN
                     PEKFQYAKSDIIAHGGAEIASYLSVTSAERYELIREMMSFVDSKNITEIKDLIDYAMSE
                     RFDDWFPLLCDNSAYIIGQYIKSNRHGGSVNSKINKG"
                     /name="replication protein"
     gene            complement(1190..1345)
                     /locus_tag="EL348_RS14790"
     CDS             complement(1190..1345)
                     /locus_tag="EL348_RS14790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002299939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="WP_002299939.1"
                     /translation="MISNEKKRVVVTLTKEVADNLDKIAKQMGLSKSGLITIWVNANGK
                     ENEQKK"
                     /name="CopG family transcriptional regulator"
     Typing          288..463
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.01e-87"
     Typing          complement(594..1123)
                     /name="rep_cluster_2351"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 gcgcttagcg aaagaacatc tgactgaagg aaaagaatat cgctctgccg gtagaagaaa
       61 ctatcttttc agcccagaag cccttaaaaa actagaaaaa gtcataacca ccaaagaagg
      121 tgagtaaatg cctaaagaaa caactatcaa cgttgaacaa ctagaaaaat tgctagaatc
      181 atattccaat gattttatcg aattgaccgg cggaaaagtc gaagaaacca ccgacctctt
      241 tgacctactt ctcacaaata ttctggaatt aaactctgaa gaacaaaaag agcataaggg
      301 aaaactgata gcaccttcct acaggaaggt ggctaagtcg gctgtgccaa ctggttttct
      361 tacaaaacaa ccttatattt tttgatatca caaaaaaatc cattttggac ctattttcgg
      421 tcataatata gtacctactt ttggtcatag tttcgtccgt agttttggtc atagtgacta
      481 agactttcac gcacaaaaaa agagctgaaa ttaacagctc ttatccttta tttatttttg
      541 aatttacact tccaccatga cgattcgatt ttatatattg cccgataata taagctgaat
      601 tatcacaaag aagcggaaac caatcatcaa atctttctga cattgcatag tcaattaaat
      661 ctttgatttc agtgatattc ttagaatcaa caaacgacat catctctcta atcaactcat
      721 atcgttctgc actcgttact gacaaataac tagcaatttc tgcaccacca tgagcgataa
      781 tatcactttt agcatattga aatttttctg gattatccat atgagcaaaa tatcgcacca
      841 taccttttgc attagcacat ttttgcgggt ttggagaccg aagcttttga gttatctcac
      901 gtatttgatc atacgtcttt ttaccgctaa acattatcaa aacatgccaa tgaggctttt
      961 tcaattcacc gtcaggattc acatctttat catgaagtgg actctcaacc caaggaacat
     1021 gtaactcatc taaaaactcc ctccaatttt caggagccga ttcaggatag actacaaacg
     1081 tccaattcct tgtgcgttca tctttagttt ttctactcgt catgctataa ttaccttaat
     1141 tgaacaacag tctaacagca aaagcagtgc gccaacacta atgcttttgc tatttttttt
     1201 gctcattttc ctttccgtta gcattaaccc aaattgtaat aagaccagac ttactaagac
     1261 ccatttgttt cgcaatttta tcaagattat ctgccacttc cttagtaagc gttacaacga
     1321 ctctcttttt ttcattactg atcataattc gtatcctcca acgacttttt cttaaaaacc
     1381 atagtaacaa aaaagtaact aaggtgcaac agtttagata ctaattagcg aataataggc
     1441 cttaaaccct tggcattact gattttgtca aaaaaaaacg ctgaaaccct tgggagagta
     1501 aggctaaaca gctatcgacc aatgaccaat gaccaataag gggggtgtcg tagtcccccc
     1561 ctcctccgcc caattcataa acaccaaaac caaaaaacaa acctcagggc tccgccccga
     1621 accccgacct ccttctaccg aaatatatgc aggcgccacg cttactattt cgttcagcta
     1681 tcggcttttg caatctaaca cgaccgtttc gctaccagtc gccttacagg ctccattctc
     1741 gcttctctta cgtgttttaa cgattgcgcc gataactaaa cgaaatagac gctaaatcgc
     1801 ttaaaacgca aaatagaccc tttttagagc attgattttt tctactagtc atttcgataa
     1861 tataaaattg accacaacac agaaaactta tattataagc ttatgtcgta agtccgacgt
     1921 actcacgtaa tatagacgga cgttaaatgg aaggagcata aatgagagtg ataaaatcag
     1981 aaaaattcac tttggccgaa attatgacga ccagcgaact tgcacaagaa cttgattaca
     2041 accaagctta cgtttt
//
