LOCUS       NZ_LR130520             3125 bp    DNA     linear   CON 13-FEB-2024
DEFINITION  Staphylococcus aureus strain BPH2986 isolate BPH2986 plasmid 3.
ACCESSION   NZ_LR130520
VERSION     NZ_LR130520.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5099554
            Assembly: GCF_900620255.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Seemann,T. and Baines L,S.
  CONSRTM   Bioplatforms Australia Antibiotic Resistant Sepsis Pathogens
            Initiative
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2018) Bioplatforms Australia, Level 4, Bldg F7B,
            Research Park Drive, Macquarie University, NSW, 2109, Australia,
            Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/13/2024 03:03:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,968
            CDSs (total)                      :: 2,886
            Genes (coding)                    :: 2,800
            CDSs (with protein)               :: 2,800
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 45 of 86
            Pseudo Genes (incomplete)         :: 41 of 86
            Pseudo Genes (internal stop)      :: 18 of 86
            Pseudo Genes (multiple problems)  :: 17 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LR130520.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="BPH2986"
                     /isolate="BPH2986"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="3"
                     /geo_loc_name="Australia"
                     /collection_date="2008-12-05"
     gene            <1..189
                     /locus_tag="EW031_RS15730"
     CDS             <1..189
                     /locus_tag="EW031_RS15730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_232037002.1"
                     /translation="LNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            223..345
                     /locus_tag="EW031_RS15785"
     CDS             223..345
                     /locus_tag="EW031_RS15785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000491229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000491229.1"
                     /translation="MFSHCFFIPIGVVAYFLFFYKDDAFDEMEEKYDYHEDNKK"
                     /name="hypothetical protein"
     gene            complement(515..1096)
                     /locus_tag="EW031_RS15495"
     CDS             complement(515..1096)
                     /locus_tag="EW031_RS15495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            1548..2543
                     /locus_tag="EW031_RS15500"
     CDS             1548..2543
                     /locus_tag="EW031_RS15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     Typing          2614..2778
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          1549..2543
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttgaataaaa acacagtgtt agatgaaggt tacgttatag caactatttt aaatgttttc
       61 tttttacttg gattaatttt tatatctcat ttggaaaatt tatatatatt aattccgtat
      121 gttattttga tgggaataaa tgctatttat ttggttgtta aggttatgaa tttcaaaaag
      181 aataattaga atatttgagg ggattttgaa acgagtttct tcttgttttc acactgtttt
      241 tttattccta ttggtgttgt tgcttacttt ttgtttttct ataaagatga tgcttttgac
      301 gagatggaag aaaaatatga ttatcatgaa gataataaaa aatagacgac gcatttatgc
      361 cgagaaaatt tattgatgtt gagaagaacc cttaactaaa cttgcagacg aatgtcggca
      421 tagcgtgagc tattaagccg accattcgac aagttttggg attgttaagg gttccgaggc
      481 tcaacgtcaa taaagcaatt ggaataaata gtatctaaag taacccgtat ttaagattac
      541 attgtacatc cttcgaaacc atagtagctg cgattccagc taggtttcct tttatcccaa
      601 ttttagctaa tttttttgct acgcccttta agtttttggc tttaacatct tcaaaaactg
      661 ctgtgattat gtttccagtt aaaagttctc catatgagtt taaaacttca gaatagaaac
      721 agtcaccgct atttttgtag ttcccaccaa ctgctctagg tgatattgaa ctagttttct
      781 ttttattctc tatgtcgttt tttagttttt ggaatccttc aggaacatat ccatatcgag
      841 atttggcatt ttctagatta acatctttag ctgttccgtc tttatctaaa ataataattt
      901 tgccatatat gtattttagt tctttttcaa tttctttttc gtttaaagtt tcaacgtttt
      961 tatctgcaat gttatttttg ttttgggctt gagcttcttt gaaattaaaa tccaagacca
     1021 ttgaaagtat ggttaaaata cttaaagata ctactaaaat ctttcttagt gatatactgt
     1081 tttgaattgc attcattgta aatgccccct tgttttgtta tttaaatgaa ttcaatataa
     1141 tattaacata taaaaacaaa ggagtttaat atgaataagt ttttttactt tttgattatt
     1201 ttattatctg tatttttaat ttttaatttt gttaattcga ttttatttga taatcctttt
     1261 gactttttag aaagttttat ttattcattg gttttcacat taatttattt aggtttagag
     1321 ggtcataaaa agaagaagga ataggttgtt ttttgaaacg agtgtgaacg agtttcttct
     1381 tgtcttgata ctatatagaa ataactcgat tttatatata tagctgtaac tgttgatatt
     1441 acagtgttta aacgtgtttt tgtgcgtgaa aggaaaattt gacaataaaa aaccccagtt
     1501 atattattaa ggtgtcgaat cttaaataat actgggggtc tttttatatg caatataata
     1561 ctactagaag tataaccgaa aatcaagata ataaaacgtt aaaagatatg acgaaaagtg
     1621 ggaaacaacg cccatggaga gaaaagaaaa tagataatgt aagctatgca gatatactag
     1681 aaattttaaa aatcaaaaag gcttttaatg taaaacaatg tggtaatatt ttagaattta
     1741 agccaactga tgaaggctat ttgaagttac ataagacatg gttttgtaaa tcaaaattat
     1801 gtccggtttg taattggaga cgtgctatga aaaatagtta tcaagctcaa aaagtgattg
     1861 aaaaagtaat taaggaaaag ccaaaagcac gttggttgtt tttaacactt tcaacaaaaa
     1921 atgcgataga tggagatact ttagaacaaa gtttgaagca tctaactaaa gcatttgata
     1981 ggttgagtag atataaaaag gttaaacaaa atcttgttgg atttatgcgt tcaacagaag
     2041 ttaccgttaa taaaaatgac ggtagttata atcagcacat gcatgttttg ttatgtgttg
     2101 aaaatgcata ttttagaaaa aaagagaatt atataactca agaagaatgg gttaatttat
     2161 ggcaaagagc attacaagtt gactatcgac ctgttgctaa tgttaaagcg atcaaaccga
     2221 atagaaaagg cgataaagac attgaatcgg caatcaaaga gacctcaaaa tattcggtta
     2281 aatcatctga ttttttaact gatgatgatg aaaaaaatca agaaattgta agtgatttag
     2341 aaaaaggttt gtatcgaaaa cgtatgttaa gttatggtgg attgcttaaa caaaaacata
     2401 aaattttaaa cttagacgat gtcgaagatg gtaatttgat taatgcaagt gatgaagata
     2461 aaacaacaga cgaagaagaa aaagcacatt caattaccgc aatttggaat ttcgaaaagc
     2521 aaaattatta tttaagacat tagtgttgac taatgtcttt tttgttgatt ttttataaaa
     2581 aagtactgtc ttatttttgt gacaaatgct gtatgtagtg tcacaaaaat aagacaaacg
     2641 caatatattg tgtcacaaaa ataagacagt acagctttgt atgatatcac tttaaaatac
     2701 cttaaaaccc ctggaatttc tggctttgcc agacctatca tttttgaatg atagcaaatt
     2761 ctccttatgc tcttacggag tttttagaga aaaattaaaa attctcgatt tttgataaaa
     2821 aacgccctgc aggaatttag aaaaacatgt ggaagtttta aaggatttta tgctaatttt
     2881 taatttgcat gtaaatgggc agtgttaaaa aattagtcac tggttttgct gaaatttttg
     2941 tttgtgaaat taccatatat ttatttggct catatttgcg ttttaagagc ttgtatatat
     3001 ttttaagtta aaaacctata tgataccccc taaaccttta aaataccccc ttaaaactca
     3061 aaataaaggt atttataatt tgagtaagtc ttgtgataaa gttttttaaa aaaggagtgt
     3121 ttatt
//
