LOCUS       NZ_LN824137             4715 bp    DNA     circular CON 25-DEC-2023
DEFINITION  Klebsiella pneumoniae strain MS6671 plasmid D, complete sequence.
ACCESSION   NZ_LN824137
VERSION     NZ_LN824137.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3257677
            Assembly: GCF_001455995.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Beatson,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2015) UQ, Beatson Microbial Genomics Group, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, St. Lucia, Brisbane, QLD 4072, Australia
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/25/2023 04:55:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,963
            CDSs (total)                      :: 5,839
            Genes (coding)                    :: 5,687
            CDSs (with protein)               :: 5,687
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 63 of 152
            Pseudo Genes (incomplete)         :: 94 of 152
            Pseudo Genes (internal stop)      :: 21 of 152
            Pseudo Genes (multiple problems)  :: 23 of 152
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            LN824137.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4715
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="MS6671"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="D"
                     /geo_loc_name="United Arab Emirates"
                     /collection_date="2014-04"
     gene            complement(join(3809..4715,1..50))
                     /locus_tag="MS6671_RS29055"
                     /old_locus_tag="MS6671_pD0030"
     CDS             complement(join(3809..4715,1..50))
                     /locus_tag="MS6671_RS29055"
                     /old_locus_tag="MS6671_pD0030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000280763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000280763.1"
                     /translation="MYLIEEALTSWLLNEYKKPVITKEEISLQIYLFYLKKEYNGERIY
                     QIRKNKAGPNEFEKNILKLLKSGVLSRVESNDKHHAYPHLIGGFYEVFFVKGNDGSPEN
                     DIVCSTYPYGYLSYLSAMDWHNITDKIPKIIHFTTCRSEQWKNKFYHDFQKDNPDIDEA
                     KQFMPRFPRNSEVNGIKIIVTQETNYVEPMKARNSPVRVSSIGKTFMDMTRRPDYCGGE
                     EHVLESFIEHGKKYAPLIIKEVDKLGRHIDKVRVGFILDRIIGVNNKKISEWKQEAGKY
                     RGSSKVLSPKSPFSPYFDEEWFISINVDMVKSYGKRN"
                     /name="hypothetical protein"
     gene            1126..1320
                     /locus_tag="MS6671_RS29060"
     CDS             1126..1320
                     /locus_tag="MS6671_RS29060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1974..2087
                     /locus_tag="MS6671_RS33460"
     CDS             1974..2087
                     /locus_tag="MS6671_RS33460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001427893.1"
                     /translation="MHEPPVQPDCCALSGNYRLESNPVRHALTPLAAATGN"
                     /name="hypothetical protein"
     gene            complement(2309..2977)
                     /locus_tag="MS6671_RS31430"
                     /old_locus_tag="MS6671_pD0010"
     CDS             complement(2309..2977)
                     /locus_tag="MS6671_RS31430"
                     /old_locus_tag="MS6671_pD0010"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016249761.1"
                     /GO_function="GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein phosphatase"
                     /protein_id="WP_223195384.1"
                     /translation="MGYIQMIAFSFSDIGNRCENLDLLSTINCQNDVFGMVIMDGYSCS
                     EWNMKILSGRLDKCVFSGDLNKDIIEPCKSVPVKAAVCFLFKNNTHLHIYNAGDCRVYN
                     KSGVLLTEDNSVAWKRLKENGIDNKKIPHLVCYCPDRNYLTSFVDFCSDEIIFNHSVFD
                     LNDENKEVILCTDGFWEHFNDGTVIDLMKDNPESNLAKFTKNIPGNAENHTVCYVRFPS
                     "
                     /name="PP2C family serine/threonine-protein phosphatase"
     gene            complement(2959..3825)
                     /locus_tag="MS6671_RS29065"
                     /old_locus_tag="MS6671_pD0020"
     CDS             complement(2959..3825)
                     /locus_tag="MS6671_RS29065"
                     /old_locus_tag="MS6671_pD0020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000409995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="WP_000409995.1"
                     /translation="MEKEINNWIEESGGKYRLMRQAVHIILKSISIEESLNEMMVMKGG
                     TLLGVKHGSDRYTKDIDFSTEKKLSEIDLGDFFNRFNDSMDVAEAELGYGIKCKVQSHK
                     IQPNAQGTFPTVQINIAFCDRSNASAMKRLESNQSPSVINIDFSFNEKTYDFDFLSLDG
                     DDDNDSVKTYSLTDLMAEKYRSVLQQKVRERNREQDIYDINYLLGKYEFSRQDKYKILE
                     SLLKKSEGKQLDNLLNVKGIRDVEIIERSSQRYQDLSSTVKSLPLFEDAYEKVACFYES
                     LPWDIFK"
                     /name="nucleotidyl transferase AbiEii/AbiGii toxin family
                     protein"
     Typing          complement(612..867)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="89.0"
                     /evalue="1.21e-116"
     Typing          complement(992..1090)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          complement(1394..1478)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          1489..2046
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.831"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttatattcat tcaacaacca agacgttagc gcttcttcga taagatacat attcaacctt
       61 ttcggtttag tctctaatag aatatacgtc ctaaggacgt atattctatt agagattgat
      121 tgtcaagaaa aaaataataa caaacaagca tttgccattt ttatattttt gatatcctat
      181 aaaataaatc ctaaggattt attttatagg ataataagta ggaagtcaag aaaaagttta
      241 cttatatcac cgttttcata acacctcatg cgatcaattc agcgccggtt atagttcaaa
      301 tccatgatta ggacatctgt tgctcataaa cgatgagcgt aaaagatcat ttttcagcgt
      361 catttaccat aacgtcgcat tacgcgcacc gctaaaacgc gctgaacgcg attctgccgc
      421 gaacaccgca aaaagagatg ttctccccgg ggtaaaccgg aaaaatgcgt caggatcgct
      481 ttcagctcac tgcatagcta tgcatgaaag tgaatgacga tcggtttggg cgcatacagt
      541 gcccatgaga cacattttcg gacattttca gttcgtgaat ccctgactca ttgctacata
      601 tctgaacaga cacccctagc agcgccccca ggggcgtcct gtaaaaaaac acaccgcgcc
      661 gctagcagca cccctaatat aaaatgatgt tttttatgaa aatagtcagt accaccccta
      721 aaaagcggtg ttggcgcagc tacaacaccg cgccgacacc gcttttttaa atatcacaaa
      781 gagagcaaga agaactaatt tgtcataact ctctatttat aaagaaaaat cagcaaaaaa
      841 ttgtttttgc gtggggtgtg ggcatttcag gcatgagaac agactcgcgt ttttccggag
      901 tatcagcgga attattgatt aagaaacact cgacgcagag cgaaatttta tgcaacagcg
      961 gctgcactgc acagggatta tttatcagtt gatatgctgt gccatgatac gtcctaaaaa
     1021 aacaggacag gatgtgcaat tgtaataccg tcgcccgcaa cgtcttacaa ttaccacctg
     1081 gtcagggtcc acccgacacc cggtactgac ggagaacaac ggaaggtgaa caaacagcaa
     1141 caaactgcgc tgaatatggc gcgatttatc aaaagccaga gcctgacact gcttgaaaaa
     1201 ctggatgctc tggatgccga cgaacaggcg gccatgtgcg aacgactgca cgaactcgcg
     1261 gaagaactcc agaacagcat ccaggttcgc tttgagaccg aaagtgaaac aggaacataa
     1321 cgaagctgac ggaggcgctc acggcttgtc cgcgagcgtt ttcggcagca gacaagcccg
     1381 ccagggcgcg tcagcgggtg tcggggcgaa gccctgaccc agtcacgtag cgatagcgga
     1441 gtgtatactg gcttaactat gcggcatcag tgcgaattgt atgaaaagtg ccccatgccg
     1501 ggtgtgaaat tccgcacaga tgcgtaagga gaaaatgcgc gtccaggcgc ttttccgctt
     1561 cctcgctcac tgactcgcta cgctcggtcg ttcggctgcg gcgagcggta ctgacttaca
     1621 caaaaacggc agcacggtta tccacagaat caggggataa ggccggaaag aacatgtgag
     1681 caaaagacca agaacaggaa gaaggccgcg ccgcaggcgt ttttccatag gctccgcccc
     1741 cctgacgagc atcacagaaa tcgacgctca agtcagaggt ggcgaaaccc gacaggactt
     1801 aaagatacca gacgtttccc cctggtggct ccctcgtgcg ctctcctgtt ccgaccctgc
     1861 cgcttaccgg atacctgtcc gcctttctcc cttcgggaag cgtggcgctt tctcatagct
     1921 cacgctgttg gtatctcagt tcggtgtagg tcgttcgctc caagctgggc tgtgtgcacg
     1981 aaccccccgt tcagcccgac tgctgcgcct tatccggtaa ctatcgtctt gagtccaacc
     2041 cggtaagaca cgccttaacg ccactggcag cagccactgg taactgattt agaggagtta
     2101 gtcttgaagt catgcgccag ttaaggctaa actgaaagaa caggttttgg tgactgcgct
     2161 cctccaagcc agttaccttg gttcttcgag ccgcaaactc tttgaaccta agagaaaacc
     2221 gccccgcaaa ggcggttttt ttcttttaca gaaaagagat tatctatatg acacgaagat
     2281 ctcaatagct tcttcaaaaa acacgaaatc aagaagggaa tctaacgtag caaaccgtat
     2341 gattctctgc gttacccggg atatttttag taaatttagc caagttagat tctgggttat
     2401 ctttcatgag gtcaataaca gtaccatcat taaaatgctc ccaaaaccca tcagtacata
     2461 aaataacctc tttgttttca tcatttaaat caaaaactga atgattgaaa attatctcat
     2521 cagagcagaa atcaacaaat gatgttagat aatttctgtc tgggcaataa caaacgaggt
     2581 gaggtatttt tttattatcg attccatttt cctttaatct tttccaggca accgagttat
     2641 cctctgttag aaggactcca cttttgttat atacacggca atctcctgcg ttatatatat
     2701 ggaggtgcgt attattttta aaaaggaaac atactgcagc cttaacagga actgacttgc
     2761 atggttcaat aatatcttta ttcagatcac cagaaaacac gcacttatct aacctaccag
     2821 agagaatttt catattccac tcagagcagg aatacccatc cataataacc attccaaaca
     2881 catcattttg acaatttatc gtagataata agtctaagtt ttcacatctg ttaccaatat
     2941 cactaaaact gaacgctatc atttgaatat atcccacgga agactttcat agaaacaggc
     3001 aactttttca taagcatctt caaaaagagg taatgattta acggtggatg ataaatcctg
     3061 atatcgctga ctggaacgct cgataatttc tacatccctt atacctttaa cgtttaagag
     3121 attatccaat tgtttacctt cactcttttt taaaagagac tccagtattt tatacttatc
     3181 ttgccgagaa aactcatatt tacctaaaag ataattgata tcatatatat cttgctctcg
     3241 atttctctct ctaacttttt gttgcaaaac ggatcgatat ttttcagcca tcaaatcagt
     3301 taagctgtag gtctttacgc tatcattgtc atcatcacca tctaatgata aaaagtcaaa
     3361 atcatacgtt ttttcgttaa agctaaaatc gatatttatc actgaaggtg attgattaga
     3421 ttcaagcctt ttcattgcag acgcattaga acgatcgcaa aaggctatat ttatctgtac
     3481 agttggaaat gttccttgtg cattaggttg aattttatga gattgaactt tacatttaat
     3541 accatatccc aattcagcct cagcaacatc cattgagtca ttaaacctat tgaaaaaatc
     3601 ccccaagtca atttcagaaa gttttttttc ggtagaaaaa tcaatatcct ttgtgtatct
     3661 atcactacca tgcttaacac caagaagagt ccctcccttc ataaccatca tttcattcaa
     3721 actctcctct atagaaatag atttaagtat tatatgtaca gcctggcgca tcaacctgta
     3781 cttcccacca gactcttcga tccaattatt aatttctttt tccataagac ttaaccatat
     3841 caacattaat agaaataaac cattcttcat caaagtaagg tgagaatgga ctctttggag
     3901 atagcacttt cgaactacct ctgtatttac ccgcctcttg tttccattcg cttatttttt
     3961 tattattaac cccaataatt ctatccaaaa tgaatccaac ccttaccttg tcaatatgac
     4021 ggccaagctt atcgacttcc tttataatca gaggtgcata ttttttaccg tgctcaataa
     4081 atgattccaa tacatgctcc tcaccaccac agtaatcagg ccgcctggtc atatccataa
     4141 aggtcttacc gatagatgat accctgacag gggaattacg agccttcatt ggctcaacat
     4201 aatttgtttc ttgtgtaacg ataattttta ttccattgac ctcagaattt cttggaaatc
     4261 taggcatgaa ttgtttggct tcgtctatat caggattatc cttttgaaaa tcatgataga
     4321 acttattctt ccactgttcg gaacgacatg tcgtaaagtg gattatcttg ggtattttat
     4381 ctgtgatgtt atgccaatcc atagcggata aataggataa gtatccatat ggatacgtag
     4441 agcacactat atcattttcc ggagaaccat cgttaccttt aacaaaaaag acctcataga
     4501 aaccgccaat taaatggggg taagcatgat gcttatcgtt actttcaact cttgataaaa
     4561 cccctgactt taataatttt aatatatttt tttcaaattc attaggtcct gctttgttct
     4621 ttctaatttg atatatcctc tcaccattat attctttttt taaataaaaa aggtaaatct
     4681 gcaaagagat ttcttctttg gttatgactg gtttt
//
