LOCUS       NZ_KY991368             2699 bp    DNA     circular CON 08-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Muenchen strain CVM
            N44358F plasmid N44358F_qnrB19, complete sequence.
ACCESSION   NZ_KY991368
VERSION     NZ_KY991368.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14227803
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Muenchen
  ORGANISM  Salmonella enterica subsp. enterica serovar Muenchen
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Tyson,G.H., Tate,H.P., Zhao,S., Li,C., Dessai,U., Simmons,M. and
            McDermott,P.F.
  TITLE     Identification of Plasmid-Mediated Quinolone Resistance in
            Salmonella Isolated from Swine Ceca and Retail Pork Chops in the
            United States
  JOURNAL   Antimicrob Agents Chemother 61 (10), e01318-17 (2017)
   PUBMED   28784677
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Tyson,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-APR-2017) CVM/OR, FDA, 8401 Muirkirk Rd MOD II,
            Laurel, MD 20708, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method                   :: CLC Genomics Workbench v. 9.0.1
            Assembly Name                     :: N44358F_qnrB19_plasmid
            Coverage                          :: 2000
            Sequencing Technology             :: Pacific Biosciences
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/08/2024 00:37:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KY991368.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Salmonella enterica subsp. enterica serovar
                     Muenchen"
                     /mol_type="genomic DNA"
                     /strain="CVM N44358F"
                     /serovar="Muenchen"
                     /isolation_source="USA"
                     /sub_species="enterica"
                     /db_xref="taxon:596"
                     /plasmid="N44358F_qnrB19"
     gene            join(<2695..2699,1..151)
                     /locus_tag="HTM70_RS00005"
                     /pseudo=""
     CDS             join(<2695..2699,1..151)
                     /locus_tag="HTM70_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            245..889
                     /locus_tag="HTM70_RS00010"
     CDS             245..889
                     /locus_tag="HTM70_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1391..1627)
                     /locus_tag="HTM70_RS00015"
     CDS             complement(1391..1627)
                     /locus_tag="HTM70_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     ARG             246..886
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1793..1966)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1945..2436
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 gctggatctg cgtgaattcc agcagcagca agagaaagac tttctacaaa ccagcttaca
       61 gcaggctaaa tttaaccaga aaaaagccgc tgaattactg ggtctgactt atcatcagct
      121 acgtgccttg ctgaagaaac accagatcta atacgcattt gcaggtgtca tactggcggg
      181 tttgacgcat aacgtcataa ggtttaccat ggcgtcatta ctgtataaaa acacaggcat
      241 agatatgact ctggcattag ttggcgaaaa aattgacaga aatcgcttca ccggtgagaa
      301 agttgaaaat agtacatttt ttaactgcga tttttcaggt gccgacctga gcggcactga
      361 atttatcggc tgccagttct atgatcgcga aagtcagaaa gggtgcaatt ttagtcgcgc
      421 aatgctgaaa gatgccattt tcaaaagctg tgatttatca atggcagatt tccgcaacgt
      481 cagtgccttg ggcattgaaa ttcgccactg ccgcgcacaa ggcgcagatt tccgcggtgc
      541 aagctttatg aatatgatca ccacgcgcac ctggttttgc agcgcatata tcactaatac
      601 taatctaagc tacgccaatt tttcgaaagt cgtgttggaa aagtgtgagc tgtgggaaaa
      661 ccgctggatg gggactcagg tactgggtgc gacgttcagt ggttcagatc tctccggcgg
      721 cgagttttcg actttcgact ggcgagcagc aaacttcaca cattgcgatc tgaccaattc
      781 ggagttaggt gacttagata ttcggggtgt tgatttacaa ggcgttaagt tagacagcta
      841 ccaggcatcg ttgctcatgg agcggcttgg catcgctgtg attggttagt tcagcgttta
      901 caccgggaga tgcgtttgac gatttacttt taaccagtac gactcctggc aagcattgtg
      961 aaacgttttc tccagtggac gaatatcctg acctaccgca tcaacgacat gccatctaat
     1021 gctgcattct ggacaggaat ttgatgaata tctaaccaat tcattttcgc gagaacaacg
     1081 aataaccact cccgaatcat gaagccatgt cttaacgaaa atatggctaa ctcatagcaa
     1141 aaaaaaagcc ccctaagggc ttttttttgt acctgacggt cagaccgatt aaacataaca
     1201 tcccttgccc gcacccccgc aggcgccctc agcgcaatcc tgctgcatca gggccgtttc
     1261 cagcaccttt cctcaccagt atcccggaaa aacgcccctg atgatttctg cgcgactgca
     1321 tggctatgca cgcaggtgaa tggcaggtga tttcgcagcg tcagcaccac taaaccgcca
     1381 aaagccaaaa tcagcggcgc ggcgcgcgcg gacgtgacca ggcaaaatcg gactgctgcc
     1441 gctcatcctc acgtaatgca cgctggcggt cggcgtaacg ctgcaactca atttgcgcac
     1501 gcgctctgtt caggacgatg tgccggttag gctgatttag ctttttacct gacgctcttt
     1561 cagctgcggc aacagcatca tcaagaaatt ttttctctgc aggcgtcaag tttgtcagtc
     1621 tggccataac gttctccagt cagaataaat cagcacagtc tgccagacac agtagaaacg
     1681 atgaagcgcc agcgacggtg aaaggcagtc agaaacggtg aacgggagcg gattttaatc
     1741 cggtgccgtg aggcgttgga caagccgcag gcgcgtcatt agcttttagc cggtttcggg
     1801 gcgcagccct gaaccagtca cgtagcgcta gcggagtgta tactggctga ctatgttggc
     1861 acggatgtgg aaatcagtga agtgcttcat gtagcaggag aaaaaaggcg gcaccagcgc
     1921 gtcagcagga tatgtagtac aggatatatt ccgcttcctc gctcactgac tcgctgcgct
     1981 cggtcgttcg gctgcggcga gcggtgccgg cttacaggcg gggcggaaat ttcctgggag
     2041 ataccaggaa ggagcttaac agggaagaga taaggccgcg gcgaagccgt ttttccatag
     2101 gctccgcccc cctgacaaac atcatgaaat ctgacgctca aatcagtggt ggcgaaaccc
     2161 gatgcggctt aaagatacca ggcgtttccc cctggtggct ccctcgtgct cccccgcatt
     2221 cctgcctttc ggtttaccgg tgtcattccg ctgttatggc cgcgtttatc tcattccacg
     2281 cctgacactc agttccgcga aggcagttcg ctcctggatg gactgtatgc acgaaccccc
     2341 cgttcagtcc gactgctgcg ccttatccgg taactatcat cttgagtcca acccggaaag
     2401 acacgactta tcgccactgg cagcagccac tggtaactga tttagaggag ttagtcttga
     2461 agttatgcgc ctgttaaggc taaactgaaa gaacagattt ggttactgcg ctcctcgtaa
     2521 gccagttacc acggttcaaa gagttgctgc tctgagaacc ttcgaaaaac cgccttgcag
     2581 ggcggttttt tcgtttacag agcaagagat tacgacgcca cagaaaggat ctcaagaaga
     2641 tccttcaccg taatggaaat ctatccaatc cgagcacata ggatacacat cgttataac
//
