LOCUS       NZ_KU674895             2617 bp    DNA     circular CON 06-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain HAD28
            plasmid pHAD28, complete sequence.
ACCESSION   NZ_KU674895
VERSION     NZ_KU674895.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14227249
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Fiegen,U., Klein,G., de Jong,A. and Kehrenberg,C.
  TITLE     Detection of a Novel qnrB19-Carrying Plasmid Variant Mediating
            Decreased Fluoroquinolone Susceptibility in Salmonella enterica
            Serovar Hadar
  JOURNAL   Microb Drug Resist 23 (3), 280-284 (2017)
   PUBMED   27404660
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Kehrenberg,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2016) Institute for Food Quality and Food Safety,
            University of Veterinary Medicine Hannover, Foundation,
            Bischofsholer Damm 15, Hannover 30173, Germany
COMMENT     ##Assembly-Data-START##
            Sequencing Technology             :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/06/2024 03:02:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KU674895.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="HAD28"
                     /serovar="Hadar"
                     /isolation_source="chicken carcass"
                     /sub_species="enterica"
                     /db_xref="taxon:149385"
                     /plasmid="pHAD28"
                     /geo_loc_name="Germany"
     gene            1016..1252
                     /locus_tag="HTG84_RS00005"
     CDS             1016..1252
                     /locus_tag="HTG84_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1672..2316)
                     /locus_tag="HTG84_RS00010"
     CDS             complement(1672..2316)
                     /locus_tag="HTG84_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(2410..>2565)
                     /locus_tag="HTG84_RS00015"
                     /pseudo=""
     CDS             complement(2410..>2565)
                     /locus_tag="HTG84_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     ARG             complement(1676..2316)
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          678..851
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(208..699)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 gatcttcttg agatcctttc tgtggcgtcg taatctcttg ctctgtaaac gaaaaaaccg
       61 ccctgcaagg cggtttttcg aaggttctca gagcagcaac tctttgaacc gtggtaactg
      121 gcttacgagg agcgcagtaa ccaaatctgt tctttcagtt tagccttaac aggcgcataa
      181 cttcaagact aactcctcta aatcagttac cagtggctgc tgccagtggc gataagtcgt
      241 gtctttccgg gttggactca agatgatagt taccggataa ggcgcagcag tcggactgaa
      301 cggggggttc gtgcatacag tccatccagg agcgaactgc cttcgcggaa ctgagtgtca
      361 ggcgtggaat gagataaacg cggccataac agcggaatga caccggtaaa ccgaaaggca
      421 ggaatgcggg ggagcacgag ggagccacca gggggaaacg cctggtatct ttaagccgca
      481 tcgggtttcg ccaccactga tttgagcgtc agatttcatg atgtttgtca ggggggcgga
      541 gcctatggaa aaacggcttc gccgcggcct tatctcttcc ctgttaagct ccttcctggt
      601 atctcccagg aaatttccgc cccgcctgta agccggcacc gctcgccgca gccgaacgac
      661 cgagcgcagc gagtcagtga gcgaggaagc ggaatatatc ctgtactaca tatcctgctg
      721 acgcgctggt gccgcctttt ttctcctgct acatgaagca cttcactgat ttccacatcc
      781 gtgccaacat agtcagccag tatacactcc gctagcgcta cgtgactggt tcagggctgc
      841 gccccgaaac cggctaaaag ctaatgacgc gcctgcggct tgtccaacgc ctcacggcac
      901 cggattaaaa tccgctcccg ttcaccgttt ctgactgcct ttcaccgtcg ctggcgcttc
      961 atcgtttcta ctgtgtctgg cagactgtgc tgatttattc tgactggaga acgttatggc
     1021 cagactgaca aacttgacgc ctgcagagaa aaaatttctt gatgatgctg ttgccgcagc
     1081 tgaaagagcg tcaggtaaaa agctaaatca gcctaaccgg cacatcgtcc tgaacagagc
     1141 gcgtgcgcaa attgagttgc agcgttacgc cgaccgccag cgtgcattac gtgaggatga
     1201 gcggcagcag tccgattttg cctggtcacg tccgcgcgcg ccgcgccgct gattttggct
     1261 tttggcggtt tagtggtgct gacgctgcga aatcacctgc cattcacctg cgtgcatagc
     1321 catgcagtcg cgcagaaatc atcaggggcg tttttccggg atactggtga ggaaaggtgc
     1381 tggaaacggc cctgatgcag caggattgcg ctgagggcgc ctgcgggggt gcgggcaagg
     1441 gatgttatgt ttaatcggtc tgaccgtcag gtacaaaaaa aagcccttag ggggcttttt
     1501 ttttgctatg agttagccat attttcgtgc gaatttttca tcggaatcgc atagataaat
     1561 aataaactca ataaacgcga tgatcgcggg tatgaatgtc cagcaaaaaa ttagatacag
     1621 gaacccctta aaagtaaatc gtcaaacgca tctcccggtg taaacgctga actaaccaat
     1681 cacagcgatg ccaagccgct ccatgagcaa cgatgcctgg tagctgtcta acttaacgcc
     1741 ttgtaaatca acaccccgaa tatctaagtc acctaactcc gaattggtca gatcgcaatg
     1801 tgtgaagttt gctgctcgcc agtcgaaagt cgaaaactcg ccgccggaga gatctgaacc
     1861 actgaacgtc gcacccagta cctgagtccc catccagcgg ttttcccaca gctcacactt
     1921 ttccaacacg actttcgaaa aattggcgta gcttagatta gtattagtga tatatgcgct
     1981 gcaaaaccag gtgcgcgtgg tgatcatatt cataaagctt gcaccgcgga aatctgcgcc
     2041 ttgtgcgcgg cagtggcgaa tttcaatgcc caaggcactg acgttgcgga aatctgccat
     2101 tgataaatca cagcttttga aaatggcatc tttcagcatt gcgcgactaa aattgcaccc
     2161 tttctgactt tcgcgatcat agaactggca gccgataaat tcagtgccgc tcaggtcggc
     2221 acctgaaaaa tcgcagttaa aaaatgtact attttcaact ttctcaccgg tgaagcgatt
     2281 tctgtcaatt ttttcgccaa ctaatgccag agtcatatct atgcctgtgt ttttatacag
     2341 taatgacgcc atggtaaacc ttatgacgtt atgcgtcaaa cccgccagta tgacacctgc
     2401 aaatgcgtat tagatctggt gtttcttcag caaggcacgt agctgatgat aagtcagacc
     2461 cagtaattca gcggcttttt tctggttaaa tttagcctgc tgtaagctgg tttgtagaaa
     2521 gtctttctct tgctgctgct ggaattcacg cagatccagc gttataacga tgtgtatcct
     2581 atgtgctcgg attggataga tttccattac ggtgaag
//
